Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10-
07] 4,510 sequences; 46,345,754 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1133 109 5e-19
seq4397 107 2e-18
>seq1133
Length=54950
Score = 109 bits (120), Expect = 5e-19
Identities = 130/174 (75%), Gaps = 2/174 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| |||| | ||||| ||| || ||||| || |||
Sbjct 54635 GTCGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCCTCAAGCTGCTTGCCA 54576
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | ||||||||||| || || ||||| ||||||||| ||| || ||||
Sbjct 54575 GCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGCTCTTG 54516
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089
| |||| |||| |||||||| |||||| |||| ||| | || ||||||||
Sbjct 54515 ACGTTG-TCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 54463
Score = 89.7 bits (98), Expect = 5e-13
Identities = 124/171 (73%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
||| || || || ||||| ||| || ||||| || || ||||| || || ||| |
Sbjct 54913 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 54854
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040
|||| |||||||| || || || ||||||||||||||| ||| || ||||| |||
Sbjct 54853 AATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTT 54794
Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091
| |||| |||||| | |||||| |||| ||| | || ||||| ||||
Sbjct 54793 G-TCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCAGTCA 54744
>seq4397
Length=39634
Score = 107 bits (118), Expect = 2e-18
Identities = 162/229 (71%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 47353 CCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGG 47412
|||| || |||| || |||| |||||| || | || ||||| |||| || | | |
Sbjct 29541 CCGAGGCTGTCGAGATCGAGAAGGAGTTCCTCACGGACGCTCTTCCCGTCGCTCTTCTTG 29600
Query 47413 GAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTC 47472
| ||||||||| | ||| | |||||||||| || || || ||||||||||| ||
Sbjct 29601 GCATGAACGCGACTCTCATGTGCCAGTACATCGAGTTCGTTGCTGACCGCCTGCTGGTGG 29660
Query 47473 AGCTAAAGTATCCCAAGATTTACCACACCGAGA---ATCCATTCGAGTTTATGAACAACA 47529
||| | ||||| ||| ||| | || | || ||||| || ||| | ||||
Sbjct 29661 CGCTGGGCAA---CAAGAAGTACTACAACTCGACCAACCCCTTCGACTTCATGGAGAACA 29717
Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
| |||||| | |||||||| ||||| |||||||||||||| || || ||
Sbjct 29718 TCTCGCTCAACGGCAAGACGAACTTCTTCGAGAAGCGCGTTGGTGACTA 29766
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475473993642400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |