Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10-
07] 4,510 sequences; 46,345,754 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq4397 264 1e-65
seq1133 120 3e-22
seq4234 95.1 1e-14
>seq4397
Length=39634
Score = 264 bits (292), Expect = 1e-65
Identities = 582/877 (66%), Gaps = 68/877 (8%)
Strand=Plus/Minus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
||||| || || || || || || | | || ||| | ||| || || |||||||||
Sbjct 29751 TTCTCGAAGAAGTTCGTCTTGCCGTTGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTG 29692
Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744
| | |||||||| ||| || | ||| | || ||||| | ||| || |||||||||
Sbjct 29691 GTCGAGTTGTAGTACTTCTTGTTGCCCAGCGCCACCAGCAGGCGGTCAGCAACGAACTCG 29632
Query 132745 ATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGT 132803
||||| || ||||| | |||| | | | || || ||| || || || || || ||
Sbjct 29631 ATGTACTGGCACATGAGAGTCGCGTTCATG-CCAAGAAGAGCGACGGGAAGAGCGTCCGT 29573
Query 132804 GAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT 132863
||| || | |||||| |||| || ||||||| ||| | | |||| | | |||
Sbjct 29572 GAGGAACTCCTTCTCGATCTCGACAGCCTCGGTGATGATCTTCTCAACGGATTCGGGGCT 29513
Query 132864 CGGCCGTTGCACCAAATG--CTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCG 132921
||| || || ||| | ||||| || ||| || |||||| ||||| ||||||
Sbjct 29512 GGGC--TTCGACTTGATGTGCGAGAACAGCAGGCAGGCGAAGTCGGTATGCATGCCCTCA 29455
Query 132922 TCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGC 132981
|| | || ||||| || ||| ||||||||| || ||||||||||| || || ||||||
Sbjct 29454 TCGCGAGAGATGAGCTCATTGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTCTTGAGC 29395
Query 132982 CAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACC 133041
|| || |||| ||||||| ||| ||||||| |||||||||||||||||||| |
Sbjct 29394 CAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAGATACCCTCGACGGCCGCGAAAGCAATG 29335
Query 133042 AGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTT 133101
|||||| |||| || | | ||| | |||||| || || ||||| ||||||||
Sbjct 29334 AGGCGCGATGCGAAGGTCGAGTTCTTGTCGCAGATCCAACGAAGGGCCCAGTCGGCCTTC 29275
Query 133102 TCTTTGACGCACGG---------------------------------CATCG-------- 133120
| |||| |||||| |||||
Sbjct 29274 TTCTTGATGCACGGGACTATAGTACTTTAGCGATCCAAGCTTTGCATCATCGAGGCGGAT 29215
Query 133121 ------------TTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--AC 133166
| || |||||||| | ||| |||| | || || || ||| |
Sbjct 29214 TGGGCTTACTGTTATCAATGGCGTTGA--AAAGATAGTTGCGCTGCCTGGGCTCGCTGAT 29157
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| ||||||||||| ||| || | || || || | ||||||||| || || ||
Sbjct 29156 GTATGTGTCGATGAGAAGCGAGTAGGTCTCAGAATGGATGTTCTCCATCATAATCTGGAA 29097
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGAT 133285
||||| ||||| || |||||| | ||| || || |||| ||| || ||||| || |
Sbjct 29096 ACCGTAGAAGCAGCGGGCCTCGGGGATCTGGACCTC-GGAGCTGAAGCGTTCGACGAGGT 29038
Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345
| ||||| ||||||||||| |||||||| || || || ||||| |||||| ||
Sbjct 29037 TCTCGTTCACGATGCCGTCAGACGCGGCGAAGAAAGCGAGGACGTGGGAGATGAAGAAGC 28978
Query 133346 GCTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402
|||||| ||||| | |||| | ||||||| | |||||||| || || | |||||
Sbjct 28977 GCTCGTCATCGTTGAGGCGCTTGTTCCAGTCGTGAAGATCCTTGGAAAGATCAATCTCCT 28918
Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| | ||||| || || |||||||| || ||||||||
Sbjct 28917 CAGCAGTCCAGAAAGAAGCCTCGGCCTTCTTGTACAT 28881
>seq1133
Length=54950
Score = 120 bits (132), Expect = 3e-22
Identities = 154/206 (75%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
|| ||||| ||||||||| |||| |||||| | | ||||| | | | |||| | ||||
Sbjct 54746 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCGAGCGACACCATCGACAACG--TCAAGA 54803
Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385
|| |||| ||||| ||||| |||||| | ||||| ||||| || |||| ||| ||||
Sbjct 54804 GCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCCGGCA 54863
Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTG 38444
| ||||| || |||| ||||| || ||||||||||||||| ||||| ||| || ||
Sbjct 54864 AGCAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGAGC-ACTCTC 54922
Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| | || || ||| | | |||||
Sbjct 54923 CACCTCGTCCTCCGTCTCCGCGGCGG 54948
Score = 118 bits (130), Expect = 1e-21
Identities = 138/183 (75%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| ||||||||| |||| |||||| | | |||| | | | |||| | ||
Sbjct 54461 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACG--TCAA 54518
Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383
|| || |||| ||||| || || |||||| | || || ||||| ||||| | ||| ||
Sbjct 54519 GAGCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCCTCATCTTCGCTGG 54578
Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443
||| ||||| || || | ||||| |||| ||||||||||||||| ||||| |||| ||
Sbjct 54579 CAAGCAGCTTGAGGATGGCCGCACTCTCAGCGACTACAACATCCAGAAGGAGTCGACCCT 54638
Query 38444 GCA 38446
||
Sbjct 54639 TCA 54641
>seq4234
Length=93090
Score = 95.1 bits (104), Expect = 1e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||| |||||| | ||||| ||||| || || | ||||||||| ||||| ||
Sbjct 35831 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCGGGCAAGCAGCTCGAG 35772
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|| | ||||| || ||||||||||||||| ||||| |||| || || | |||||
Sbjct 35771 GATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTTGTGCTC 35712
Query 38457 CG 38458
||
Sbjct 35711 CG 35710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500144602758400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |