Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10- 07] 4,510 sequences; 46,345,754 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4397 264 1e-65 seq1133 120 3e-22 seq4234 95.1 1e-14 >seq4397 Length=39634 Score = 264 bits (292), Expect = 1e-65 Identities = 582/877 (66%), Gaps = 68/877 (8%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | || ||| | ||| || || ||||||||| Sbjct 29751 TTCTCGAAGAAGTTCGTCTTGCCGTTGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTG 29692 Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744 | | |||||||| ||| || | ||| | || ||||| | ||| || ||||||||| Sbjct 29691 GTCGAGTTGTAGTACTTCTTGTTGCCCAGCGCCACCAGCAGGCGGTCAGCAACGAACTCG 29632 Query 132745 ATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGT 132803 ||||| || ||||| | |||| | | | || || ||| || || || || || || Sbjct 29631 ATGTACTGGCACATGAGAGTCGCGTTCATG-CCAAGAAGAGCGACGGGAAGAGCGTCCGT 29573 Query 132804 GAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT 132863 ||| || | |||||| |||| || ||||||| ||| | | |||| | | ||| Sbjct 29572 GAGGAACTCCTTCTCGATCTCGACAGCCTCGGTGATGATCTTCTCAACGGATTCGGGGCT 29513 Query 132864 CGGCCGTTGCACCAAATG--CTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCG 132921 ||| || || ||| | ||||| || ||| || |||||| ||||| |||||| Sbjct 29512 GGGC--TTCGACTTGATGTGCGAGAACAGCAGGCAGGCGAAGTCGGTATGCATGCCCTCA 29455 Query 132922 TCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGC 132981 || | || ||||| || ||| ||||||||| || ||||||||||| || || |||||| Sbjct 29454 TCGCGAGAGATGAGCTCATTGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTCTTGAGC 29395 Query 132982 CAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACC 133041 || || |||| ||||||| ||| ||||||| |||||||||||||||||||| | Sbjct 29394 CAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAGATACCCTCGACGGCCGCGAAAGCAATG 29335 Query 133042 AGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTT 133101 |||||| |||| || | | ||| | |||||| || || ||||| |||||||| Sbjct 29334 AGGCGCGATGCGAAGGTCGAGTTCTTGTCGCAGATCCAACGAAGGGCCCAGTCGGCCTTC 29275 Query 133102 TCTTTGACGCACGG---------------------------------CATCG-------- 133120 | |||| |||||| ||||| Sbjct 29274 TTCTTGATGCACGGGACTATAGTACTTTAGCGATCCAAGCTTTGCATCATCGAGGCGGAT 29215 Query 133121 ------------TTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--AC 133166 | || |||||||| | ||| |||| | || || || ||| | Sbjct 29214 TGGGCTTACTGTTATCAATGGCGTTGA--AAAGATAGTTGCGCTGCCTGGGCTCGCTGAT 29157 Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||||||||| ||| || | || || || | ||||||||| || || || Sbjct 29156 GTATGTGTCGATGAGAAGCGAGTAGGTCTCAGAATGGATGTTCTCCATCATAATCTGGAA 29097 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGAT 133285 ||||| ||||| || |||||| | ||| || || |||| ||| || ||||| || | Sbjct 29096 ACCGTAGAAGCAGCGGGCCTCGGGGATCTGGACCTC-GGAGCTGAAGCGTTCGACGAGGT 29038 Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345 | ||||| ||||||||||| |||||||| || || || ||||| |||||| || Sbjct 29037 TCTCGTTCACGATGCCGTCAGACGCGGCGAAGAAAGCGAGGACGTGGGAGATGAAGAAGC 28978 Query 133346 GCTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402 |||||| ||||| | |||| | ||||||| | |||||||| || || | ||||| Sbjct 28977 GCTCGTCATCGTTGAGGCGCTTGTTCCAGTCGTGAAGATCCTTGGAAAGATCAATCTCCT 28918 Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| || || |||||||| || |||||||| Sbjct 28917 CAGCAGTCCAGAAAGAAGCCTCGGCCTTCTTGTACAT 28881 >seq1133 Length=54950 Score = 120 bits (132), Expect = 3e-22 Identities = 154/206 (75%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| ||||||||| |||| |||||| | | ||||| | | | |||| | |||| Sbjct 54746 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCGAGCGACACCATCGACAACG--TCAAGA 54803 Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| ||||| ||||| |||||| | ||||| ||||| || |||| ||| |||| Sbjct 54804 GCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCCGGCA 54863 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTG 38444 | ||||| || |||| ||||| || ||||||||||||||| ||||| ||| || || Sbjct 54864 AGCAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGAGC-ACTCTC 54922 Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGG 38470 || | || || ||| | | ||||| Sbjct 54923 CACCTCGTCCTCCGTCTCCGCGGCGG 54948 Score = 118 bits (130), Expect = 1e-21 Identities = 138/183 (75%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| ||||||||| |||| |||||| | | |||| | | | |||| | || Sbjct 54461 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACG--TCAA 54518 Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || || |||| ||||| || || |||||| | || || ||||| ||||| | ||| || Sbjct 54519 GAGCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCCTCATCTTCGCTGG 54578 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||| ||||| || || | ||||| |||| ||||||||||||||| ||||| |||| || Sbjct 54579 CAAGCAGCTTGAGGATGGCCGCACTCTCAGCGACTACAACATCCAGAAGGAGTCGACCCT 54638 Query 38444 GCA 38446 || Sbjct 54639 TCA 54641 >seq4234 Length=93090 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| | ||||| ||||| || || | ||||||||| ||||| || Sbjct 35831 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCGGGCAAGCAGCTCGAG 35772 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | ||||| || ||||||||||||||| ||||| |||| || || | ||||| Sbjct 35771 GATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTTGTGCTC 35712 Query 38457 CG 38458 || Sbjct 35711 CG 35710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500144602758400