Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10- 07] 4,510 sequences; 46,345,754 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1133 304 2e-77 seq536 116 5e-21 >seq1133 Length=54950 Score = 304 bits (336), Expect = 2e-77 Identities = 682/1017 (67%), Gaps = 17/1017 (2%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | ||| ||||| ||||| | || ||||| || || |||||||||||||| Sbjct 37350 TCACCGGACAGGATAGCGGCCTGGACGGCAGCACCGTAGGCAACGGCCTCATCGGGGTTG 37291 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || | || || | ||| | || || || ||| Sbjct 37290 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAAACCATCTTCTGGATCTTGGGG 37231 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || ||||| || | ||||| || | || || || |||||||| | Sbjct 37230 ATACGGGTGGAGCCACCAACGAGGACGATCTCGTGGACGGAGGACTTGTCGATCTTGGCA 37171 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || |||||||| ||||| ||||| | |||| || || ||| Sbjct 37170 TCACGGAGGACACGCTCGACAGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCAGAGCTCC 37111 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || ||||| |||||||| ||||| || ||||| |||| || ||| | | || || || Sbjct 37110 TCGAAACGAGCACGGGTGATGGAGGTGTAGAAGTCAATACCCTCGAACAGGGAGTCGATC 37051 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || |||| || || || | || | || ||||| || ||||| || || || || Sbjct 37050 TCGATGGAGGTCTGCGCAGAGCTGGACAGGGTGCGCTTGGCACGCTCGCAAGCAGTGCGG 36991 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429 | ||| || ||||| || | ||| | | || || || || || | || || || Sbjct 36990 AGACGGCGGAGGGCGCGAGCGTTGGTAGTCAAGTCCTTTTTGTGCTTTCTCTTGAATTCG 36931 Query 7430 TCAGAGAAGTG-TCGA--AGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486 | |||||| | || ||| | | || || || |||||||| | ||| || || Sbjct 36930 TTGACGAAGTGGTTGACAAGGCGGTTG---TCAAAGTCCTCACCACCAAGGTGAGTGTCA 36874 Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAAC 7546 || ||||| | ||||| || |||||||| | || || | | | ||| ||||| || Sbjct 36873 CCGGCGGTGGACTTGACCTCGAAGATACCCTCCTCGATAGTCAGGAGCGAGACATCGAAA 36814 Query 7547 GTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG-TCGTCTTTG---TTCTTATC 7602 ||||||||||| || || || || || ||||| || ||| | || ||||| || Sbjct 36813 GTACCACCACCAAGATCGAAGATCAGGACGTTG----CGCTCGCCAGTGGCCTTCTTGTC 36758 Query 7603 GAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCC 7662 |||||||| |||||||| || || || || || || || ||||| || ||| ||||| Sbjct 36757 AAGACCGTAGGCGATAGCAGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTGAGGCC 36698 Query 7663 AGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 |||||| | ||||| || || || || || || || ||||| |||||||| ||||| Sbjct 36697 AGCAATGAGACCGGCATCCTTGGTGGCCTGACGCTGAGAGTCGTTGAAGTAGGCGGGGAC 36638 Query 7723 CGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTT 7782 || ||||| |||| |||| | |||||| || || || || | || |||| || Sbjct 36637 AGTGACGACAGCGTTGTTGACGGTGCCACCGAGGTAAGACTCGGCAGTCTCCCTCATCTT 36578 Query 7783 GGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATC 7842 ||| || ||||| || |||||||| |||| | || ||| || || || || || Sbjct 36577 GGTGAGGACCATGGAGGAAATCTCCTCAGGAGTGAAAGTCTTCTCCTCGCCCTTGAACTC 36518 Query 7843 AACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCAT 7902 || | || | ||| || |||| | || |||||| | | | | ||||| Sbjct 36517 GACCTGGATGACGGGCTT-GCCGCTCTTC--TCAATGACCTTAAAGGGGAAGTGCTTCAT 36461 Query 7903 ATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAAC 7962 ||| | ||||||| |||| ||||| | ||||| | |||||| || || || || Sbjct 36460 ATCCGCCTGGACCTCGGGGTCGTCGAACTTGCGGCCGATCAAACGCTTAGCGTCGAAGAC 36401 Query 7963 TGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTC 8019 ||||| | |||||||||||| |||||||| || | ||| ||||| ||||| || Sbjct 36400 GGTGTTGTGGGGGTTCATGGCGACCTGGTTCTTGGCGGAGTCACCGATCAGACGCTC 36344 >seq536 Length=72312 Score = 116 bits (128), Expect = 5e-21 Identities = 242/358 (68%), Gaps = 3/358 (1%) Strand=Plus/Minus Query 7401 TATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGA 7460 || ||||||| || |||| ||||| | |||||| |||||| | | |||| Sbjct 19825 TACCTTTCTTGGTCTTGCGTTGGAACTCCTTCTTGAAGTGGTCAAGGAGGTTGGTGTCGA 19766 Query 7461 AATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTT 7520 | || | |||||| | ||| || || || ||||| || ||||| |||| ||| || | Sbjct 19765 AGTCCTGACCACCAAGGTGAGTGTCACCAGCGGTGGCCTTGACAGTGAAGACACCGCCCT 19706 Query 7521 CAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCG 7580 |||| | | || ||||| || ||||||||||| ||||| | || || |||||| Sbjct 19705 GGATGTGCAGAAGGGAGACATCGAAAGTACCACCACCAAGGTCGTAGATCAGGACGTTCC 19646 Query 7581 TATCGTCGTCTTTGTT--CTTATC-GAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 | || | || || | | | ||||||||| || || || || || || || || | Sbjct 19645 TCTCCTTCTCGGACTTGCCGGAGCCGAGACCGTAGGCAATGGCGGCGGCAGTAGGCTCGT 19586 Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697 |||| ||||| || ||| || || ||||| | | || || || || || || || | Sbjct 19585 TAATGATACGGAGGACGTTGAGCCCGGCAATGGCACCGGCGTCCTTGGTGGCCTGACGCT 19526 Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 | ||||| |||||||||||||| || | ||| || | | || ||||| ||||| Sbjct 19525 GGTTGTCGTTGAAGTAGGCCGGGACAGTGATGACGGCCTTCTCAACCTTCTTGCCGAG 19468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635096994388400