Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10- 07] 4,510 sequences; 46,345,754 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq906 102 1e-16 seq4397 86.0 7e-12 seq930 82.4 9e-11 >seq906 Length=144635 Score = 102 bits (112), Expect = 1e-16 Identities = 299/458 (65%), Gaps = 2/458 (0%) Strand=Plus/Plus Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528 || || || ||||| ||||| ||||| | | |||||||| | ||||| ||| Sbjct 62833 GACGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGACGATTTCGCAGCAC 62892 Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588 | |||||| || ||| || || | ||||| ||||| ||||| |||||| ||| Sbjct 62893 AGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCC 62952 Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-C 106647 ||||| | |||| |||| | || || || ||| | || ||| || || | ||| | | Sbjct 62953 TTGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGATCGCGTACCAGAGC 63012 Query 106648 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 106707 || | | || ||| | || | || |||||| ||| |||| ||||||||| Sbjct 63013 TTCTGAGCACGG-ACAGTCTCGCGACCACGACCCTCCTTCTCATACTGCTCGTAGAGGGC 63071 Query 106708 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 106767 || || |||||||| |||||| ||||| || || || || || | || | Sbjct 63072 CTCGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTAGGGCACATGAGGGT 63131 Query 106768 CCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 106827 ||| || || |||||| ||||||||||| || || |||||||| || | | || Sbjct 63132 CCAGGTGCCGTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCGTAGAA 63191 Query 106828 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCAT 106887 || || | | ||| |||| || | || ||||| || | || || || | Sbjct 63192 AAGGTCACGAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGGTCGAGAAAGCTGAA 63251 Query 106888 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 106925 || ||| || ||||| ||||| || |||| |||| || Sbjct 63252 GACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAG 63289 >seq4397 Length=39634 Score = 86.0 bits (94), Expect = 7e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 |||||||| || || || || ||||| ||||| | || |||||||| || |||||| Sbjct 29460 CCCTCATCGCGAGAGATGAGCTCATTGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTC 29401 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| |||| | | ||| || ||| ||||||||||||||| || ||| || Sbjct 29400 TTGAGCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAGATACCCTCGACGGCCGCGAAA 29341 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCA-AACCATTTCATTGCCCATTT 117470 |||| |||||| ||||||| |||| |||| || | ||| | ||||| | Sbjct 29340 GCAATGAGGCGCGATGCGAAGG-TCGAGTTCTTGTCGCAGATCCAACGAAGGGCCCAGTC 29282 Query 117471 CGCCTTCTTCTCAATACATGGTAC 117494 |||||||||| || || || || Sbjct 29281 GGCCTTCTTCTTGATGCACGGGAC 29258 >seq930 Length=65306 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGT-TGATTTTCGCGGGCGATTTCAAAGAG 9430 ||||| || ||||| ||||| | ||| || || || | ||| || || || | || || Sbjct 2531 GCATCGATTTCATCGATGAAAATAATGCAGGGGGTGCTCTTC-CGCGCTGTTGCGAAAAG 2589 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAAC 9489 || || || || || ||| ||||| || ||||||||||| || | | || ||| Sbjct 2590 GTCACGGACTCTAGAGGGGCCGACACCCACGAACATCTCCACGAACTCGGAACCGCTAAC 2649 Query 9490 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549 | || ||| || || | ||||||||| ||| |||| ||||| | |||||||| | Sbjct 2650 GCT-GAAGAAAGGCACTTGAGATTCACCGGCAGTGGCCTTAGCGAGCAACGTCTTACCGG 2708 Query 9550 TACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 |||| || ||| | ||| | |||||| || || || ||||| || Sbjct 2709 TACCGGGAGGACCTGAGAGAATGGCACCACGCGGGATTTTGGCACC 2754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589947539832400