Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10- 07] 4,510 sequences; 46,345,754 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4397 131 3e-25 seq906 123 5e-23 >seq4397 Length=39634 Score = 131 bits (144), Expect = 3e-25 Identities = 333/510 (65%), Gaps = 7/510 (1%) Strand=Plus/Plus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTG 25873 ||||||||| |||||| |||||| | |||||| | | ||| | | || || | Sbjct 29265 GCATCAAGAAGAAGGCCGACTGGGCCCTTCGTTGGATCTGCGACAAGAACTCGACCTTCG 29324 Query 25874 GCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGG 25933 ||| || | || || || || || ||||| ||||| |||||||| || || || Sbjct 29325 CATCGCGCCTCATTGCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCCT 29384 Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTC 25992 |||| |||||||||||| || || |||||| || || ||||| ||||| |||||| Sbjct 29385 CCATTTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTTTG-ACTTTCTCCAATGAGCTC 29443 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052 ||| | || ||||| | || | || || ||||||||||| | | || ||| | Sbjct 29444 ATCTCTCGCGATGAGGGCATGCATACCGACTTCGCCTGCCTGCTGTTCTCG---CACATC 29500 Query 26053 CTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAG 26112 || || | || |||| | | ||||||| |||||||| ||||||||| Sbjct 29501 AAGTCGAAGCCCAGCCCCGAATCCGTTGAGAAGATCATCACCGAGGCTGTCGAGATCGAG 29560 Query 26113 AAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATG 26172 |||||||| | | ||||||||| | |||||| Sbjct 29561 AAGGAGTTCCTCACGGACGCTCTTCCCGTCGCTCTTCTTGGCATGAACGCGACTCTCATG 29620 Query 26173 AGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACT 26231 |||| ||||| |||| || || |||| ||||| ||| | |||||| | | Sbjct 29621 TGCCAGTACATCGAGTTCGTTGCTGACCGCCTGCTGGTGGC-GCTGGGCAACAAGAAGTA 29679 Query 26232 CTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291 ||||| || | ||||| |||||||| ||||| ||||| ||| | | || ||||| || Sbjct 29680 CTACAACTCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAGACGAA 29739 Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||| || ||| | || || ||||| || Sbjct 29740 CTTCTTCGAGAAGCGCGTTGGTGACTACCA 29769 Score = 89.7 bits (98), Expect = 1e-12 Identities = 163/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | || |||||| || || ||||||||||| Sbjct 28872 ATTTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGATCTT 28931 Query 25537 GCCAAGGACATGGACGGCTGGTAC--GCTC-TATCCAAAGACGAGCAGCATTTTC-TCAA 25592 ||||||| | ||| |||| || || | | | | ||||||| || | ||| || Sbjct 28932 TCCAAGGATCTTCACGACTGGAACAAGCGCCTCAACGATGACGAGC-GCTTCTTCATCTC 28990 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | || ||||| || || ||||| || || ||||||||||| || ||| | Sbjct 28991 CCACGTCCTCGCTTTCTTCGCCGCGTCTGACGGCATCGTGAACGAGAACCTCGTCGAACG 29050 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | || || ||| | |||||| || ||||||||||||||||| Sbjct 29051 CTTCAGCTCCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGAT 29104 >seq906 Length=144635 Score = 123 bits (136), Expect = 5e-23 Identities = 668/1043 (64%), Gaps = 45/1043 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 || || |||||||||||||| ||||| ||||| |||| || ||||||||| ||| Sbjct 62551 GTGAGAGCAGCGTGGTAGATAGTCTCGAAGATTTGAATGTTCAGCTGCTTGGCCTCAGGA 62610 Query 221477 GAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 ||| ||| |||||||| || | | ||||| |||| || || || | || || | | Sbjct 62611 GAATCGAACGGCATACGAAG-AGCAAGGAAAG-CGTCAGCAAGACCGTTGACACCAACAG 62668 Query 221535 CGATGGGCCTGTGTCTCCTGTTGGAAGCGGCC--GCTTCTGGCACGGGATAAAAGTTGAC 221592 |||| || | ||| | | ||||| | || |||||||| || || || ||| | Sbjct 62669 CGATAGGACGGTGACGCATGTTGCT--CTTCCTGGCTTCTGGAACTGGGTAGTGGTTAAT 62726 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 ||| || | ||||| || ||| | || | | |||||| ||||||| Sbjct 62727 GTCAATGATCTTGTTCAGATTCTTGACAAGCACCTGAGTAACCTCGTGAAGCTTCT---- 62782 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 |||| | | | | || || | || || || || | | ||| || | Sbjct 62783 --TGAAGTCGTA---GACACCTTCCTCGACA---TCGACGAAGGTGGGTAGCGCCAGAGA 62834 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 || | ||| ||||| || || || || ||| |||| | ||| || || || Sbjct 62835 CGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGACGATTTCGCAGCACAG 62894 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCT 221831 |||| || ||||| || |||| || || || |||||| ||| ||| | |||| Sbjct 62895 GTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGTCCT 62953 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 |||| | ||| ||||| || || || | ||| ||| | || ||| || |||||| | Sbjct 62954 TGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGATCGCGTACCAGAGCT 63013 Query 221892 CTCTG-GCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATAC--CCGGTATAG 221947 |||| || | || ||| || ||| | |||||| ||| |||||| | ||| || Sbjct 63014 -TCTGAGCACGGACAGTC-TCGCGACCACGACCCTC---CTTCTCATACTGCTCGTAGAG 63068 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 || | | || | ||||| || | ||| | || || || ||| | || ||||| Sbjct 63069 GGCCT--CGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTAGGGCACATG 63126 Query 222008 AGACTCCAG-TGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066 || ||||| ||| ||| | | || | || ||||||||| || || ||||| || || Sbjct 63127 AGGGTCCAGGTGCC-GTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGC 63185 Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126 | || || || | | || |||||| |||| ||| || | || || | ||| Sbjct 63186 GTAGAAAAGGTCACGAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGGTCGAGAAA 63245 Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186 || | ||||| ||||||||||| || |||| ||| | ||| ||||| |||||||| Sbjct 63246 GCTGAAGACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAGCACCGGGGCGCTTGTT 63305 Query 222187 GCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245 |||||||| | || | | ||| | |||| | | || || | || | || | Sbjct 63306 ACCACCCTGGT-CAACGTAGCGGGCAGTGTTGTTGTACACACGGAGCATAGGGATGAGGC 63364 Query 222246 CGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCC---TCAGGT-TACTG 222301 ||||| ||||| || || |||||| || ||| | | ||| || Sbjct 63365 CGTTGCTGGTGCCGTTAGTACCGGCAATGTAGCTGCCAGTGGCACGGATGCGGTGAACGT 63424 Query 222302 GCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361 |||| ||||||||||||||| || ||||||||||| ||| |||| || ||||| Sbjct 63425 TCAGA----CCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTCAGGGTGTCG 63480 Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT 222421 ||| ||||| || |||||||| | || | || || ||||| | || ||||| Sbjct 63481 TAGATACCCTCAATGCTATCCTCCTTCATGTCGATGAGGAAGCAAGAAGCCAACTGAGGC 63540 Query 222422 TTGGTGGAACAGGCGTTAAACAG 222444 |||| | || || || ||||| Sbjct 63541 TTGGGAGTACCAGCATTGAACAG 63563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928792436374400