Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10- 07] 4,510 sequences; 46,345,754 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq906 87.8 2e-12 seq4397 86.0 7e-12 >seq906 Length=144635 Score = 87.8 bits (96), Expect = 2e-12 Identities = 294/455 (65%), Gaps = 2/455 (0%) Strand=Plus/Minus Query 75600 TCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCA 75659 |||| ||||| | || || |||||||| ||| || | || || || | || | Sbjct 63286 TCGCCATCTACCTCGAGCCGTGGCATGCTGATGTCTTCAGCTTTCTCGACCTCCGTAAGA 63227 Query 75660 ACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACC 75719 |||| || | || |||| ||| | | || || || | | || |||||||| || | Sbjct 63226 ACCACGGAAAAGAGGAGGTTCGCGCTCGTGACCTTTTCTACGCTCTCTGGATTCCCGATC 63167 Query 75720 TTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCAC 75779 | ||||||||||| |||||| || || ||| | || | || || || || | Sbjct 63166 TCTTCATGAAGCGTGTTGAGCAGAACGGCACCTGGACCCTCATGTGCCCTAACGAGTGCC 63107 Query 75780 CAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG 75839 | ||||| |||||| |||||||| || || ||||||||| ||||||| ||| Sbjct 63106 CTGGTCTTGCCGACGTCTATGGTGAGGAATTCGAGGCCCTCTACGAGCAGTATGAGAAGG 63047 Query 75840 AGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCA 75898 ||||| | | | |||||| || | | || | | ||| | || || ||| | | Sbjct 63046 AGGGTCGTGGTCGCGAGACTGT-CCGTGCTCAGAAGCTCTGGTACGCGATCCTCGAGGCC 62988 Query 75899 CAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAAC 75958 ||| || || || | || | ||| | |||||||| || ||| ||||| ||| Sbjct 62987 CAGGTCGAAACCGGTAACCCCTTCATGTTGTACAAGGACCACTGCAACCGCAAGAGCAAC 62928 Query 75959 CAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACA 76018 || ||||| | || || || ||||| || || ||| ||||| | |||||||| Sbjct 62927 CAGAAGAACCTTGGCACCATTCGTAGCTCCAACCTGTGCTGCGAAATCGTCGAGTACACC 62868 Query 76019 GATAAGGATGAGACGGCTGTTTGCAATTTGGCATC 76053 | | ||||| ||||| ||||| || || || Sbjct 62867 GCTCCTGATGAAGTCGCTGTGTGCAACTTAGCGTC 62833 >seq4397 Length=39634 Score = 86.0 bits (94), Expect = 7e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTT-TGACACAAAGTCTCG 65066 || || || || |||||||||| | ||||| | ||| | || |||| |||| Sbjct 29258 GTCCCGTGCATCAAGAAGAAGGCCGACTGGGCCCTTCGTTGGATCTGCGACAAGAACTCG 29317 Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 ||||||| |||||| |||| || ||| || ||||||||||||||| ||| || Sbjct 29318 A-CCTTCGCATCGCGCCTCATTGCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTC 29376 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 ||| | | |||| ||| | |||||||| || |||||||| || | ||||| || Sbjct 29377 TTTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTTTGACTTTCTCCAA 29436 Query 65187 TGAACTTATTTCCCGAGATGAGGG 65210 ||| || || || || |||||||| Sbjct 29437 TGAGCTCATCTCTCGCGATGAGGG 29460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596535968388800