Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10- 07] 4,510 sequences; 46,345,754 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1088 187 3e-41 seq4397 172 7e-37 seq3338 116 5e-20 seq343 116 5e-20 seq906 102 1e-15 >seq1088 Length=3899 Score = 187 bits (206), Expect = 3e-41 Identities = 344/498 (69%), Gaps = 10/498 (2%) Strand=Plus/Minus Query 1852159 CGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 1852218 ||| | ||| || ||||| ||||| || ||||||||||| | || || || |||| Sbjct 2527 CGCTAGGGCGAAGATCTTCCGCTGATCCACGCCGCCAAACTGCACATCCACATCCAGGTA 2468 Query 1852219 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTG-CGGT 1852277 |||||||||||||||||||||||| ||||||| || | | ||| ||||| ||| | || Sbjct 2467 CTGCTCGTCGAGGGCCTGCATGAGAGGGTAGATCAGGCCGGACAGTAGCGGATTGTCCGT 2408 Query 1852278 CCATCTTGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGC-CGGTGCGCACG-TGCGCC 1852333 | |||||| |||| || | ||| | | ||| ||||| ||||| || | ||| | Sbjct 2407 CTG-CTTGACGACCTCGGCACCCGCCCTCTTCGCGTCGTGCTCGGTGGTCATGGTGCTC- 2350 Query 1852334 GCGAGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACA 1852393 || || | ||||| | | |||| | | |||||||||| |||| |||| Sbjct 2349 ---AGGCGCAACAGGTCCATCATGTAGTCCGGGGACTTCTGGTACTCGCTGCCCAGCACG 2293 Query 1852394 AACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCG 1852453 ||||| || | | | | || |||||||| | || |||| | ||||| | ||| | Sbjct 2292 AACTCCAGACGGTCGACCGACACGCCGACGGCCTTGAGCGACTCGGTGATGACGTACTTG 2233 Query 1852454 TACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCG 1852513 || | | |||| | ||| || || |||| ||| |||||||||| |||| Sbjct 2232 TAATACTTGGCGCGGTAATTGACGAGCTCGATGGGCGCCTTCAGGTTGTCGAGGAAGGCG 2173 Query 1852514 TGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTG 1852573 || | ||||| | ||||||||||| ||||||||||||| || || | || | ||| Sbjct 2172 TGAATATCGGCCAGCAGGATCTTGACGTGACAGCCGGCCTGCAGGAACTGCGCGATCTTG 2113 Query 1852574 AAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATG 1852633 | || ||||| |||||||| |||||| |||| |||| ||| || ||||| || || Sbjct 2112 AGCATCGGCACGAAGTAGCCGCAGTGCGGCCTGCCGGTCGTCGCGGTACCCCAGTAGATC 2053 Query 1852634 ATCAGGGGGCGCTCGGCC 1852651 | || || |||||| || Sbjct 2052 TTGAGCGGACGCTCGCCC 2035 >seq4397 Length=39634 Score = 172 bits (190), Expect = 7e-37 Identities = 185/245 (76%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||| ||| || || |||||| |||||| ||||| |||||||| | ||||||||| Sbjct 29776 CGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTTGAGCGAGAT 29717 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 |||||| | ||| ||||||| || ||||||| ||| | | || |||| | | Sbjct 29716 GTTCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCCCAGCGCCAC 29657 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 ||||||||||| || || ||||||||||||||||||||||| ||||||||||| | Sbjct 29656 CAGCAGGCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGTCGCGTTCATGCCAAG 29597 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 || || || || || | || | | ||||| |||||||||||||| |||||| ||| Sbjct 29596 AAGAGCGACGGGAAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAGCCTCGGTGAT 29537 Query 868930 GATCT 868934 ||||| Sbjct 29536 GATCT 29532 Score = 109 bits (120), Expect = 7e-18 Identities = 175/251 (70%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||||||||| || |||||||| ||||| ||| | |||| | | ||| Sbjct 29125 GAATGGATGTTCTCCATCATAATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATCTGG 29066 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||| || || | ||||||||| |||||||||||| |||||||| Sbjct 29065 ACCTCGGAGCTGAAGCGTTCGACGAGGTTCTCGTTCACGATGCCGTCAGACGCGGCGAAG 29006 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809 ||||| |||||||| ||| ||| ||||||||| ||| ||| || ||||| | Sbjct 29005 AAAGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGGCGCTTGTTCCAGTCG 28946 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 || | || || | |||||| || ||||||| || ||||||||||| ||| Sbjct 28945 TGAAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCAGAAAGAAGCCTCGGCCTTCTTG 28886 Query 869870 TACATCTCCCA 869880 ||||||| ||| Sbjct 28885 TACATCTGCCA 28875 Score = 87.8 bits (96), Expect = 2e-11 Identities = 114/156 (73%), Gaps = 9/156 (6%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || ||||||||||| |||||||||||||| || |||| | |||| ||| ||| ||| Sbjct 29421 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAG 29362 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||||||||| || || | ||||| ||| || ||| |||||| | |||| Sbjct 29361 ATACCCTCGACGGCCGCGAAAGCAATGAGGCGCGATGCGAAG--GTCGAG----TTCTTG 29308 Query 869339 T---TGATCCACTTCATCGCCCAGTCGGCCTTTTTC 869371 | |||||| | |||||||||||||| ||| Sbjct 29307 TCGCAGATCCAACGAAGGGCCCAGTCGGCCTTCTTC 29272 >seq3338 Length=114352 Score = 116 bits (128), Expect = 5e-20 Identities = 141/190 (74%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 1726965 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 1727024 |||| | ||| |||||| || |||||||||||| |||||||| ||||| ||||| |||| Sbjct 63341 CGTCAATGTCCGGGTCGTTGATCAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGA 63400 Query 1727025 CATAGGCGCGCATGACCACGCAAAGCGCGTCGCCGACCTCGTCTCGGACAAAGGCGCGCA 1727084 ||||||||||||| | ||| ||| || ||| | || | |||| | | ||| || Sbjct 63401 GGTAGGCGCGCATGATGATGCACAGCTCGCCGCTCAGCT--TATCGG-CCAGGGCCTTCA 63457 Query 1727085 GGCGTCGGCCATAGTCGACGACGGCCGCCGGGTCGTGCGCCGAACACGGACCAACGATAA 1727144 |||| || | || |||||| ||| |||||||||| ||| || || || || || | Sbjct 63458 GGCGCTGGGCGTACTCGACGGCGGTTTCCGGGTCGTGGATCGAGCAGGGGCCGACCATGA 63517 Query 1727145 CCAGCAGCCG 1727154 ||||||| || Sbjct 63518 CCAGCAGACG 63527 >seq343 Length=154369 Score = 116 bits (128), Expect = 5e-20 Identities = 254/370 (69%), Gaps = 9/370 (2%) Strand=Plus/Plus Query 1726674 ATAGAAAGGTATGCGGCTGGGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTC 1726732 |||| ||| ||||| || | |||||| | |||||||| || || || | | | Sbjct 22966 ATAGGAAGTGGTGCGGGTGCTGGACGGCGCCGATGGCGTCGA-TGGCGACGTCGAAGGAG 23024 Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGC 1726792 |||||||||||||| |||||||||| || | | ||| | || |||| |||||||||| Sbjct 23025 CCGTCGGTGCCGTTTTTGAAGCCGACGGGGAAGGACAGGCCGGAGGCCAGCTCGCGGTGC 23084 Query 1726793 ACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCAAATA- 1726851 | |||||||||||| ||||||||||| | |||||| | | |||||| || | || Sbjct 23085 AGCTGGCTCTCGGTGGTGCGCGCGCCAATGGCGCCGACGGTGATCAGGTCGGCGAGGTAC 23144 Query 1726852 AGGGGCCACCAGAGGACTGAGAAACTCGACGGCCACGGGCTGATCGACGGCG-ACGACGA 1726910 | ||| | | | | || | |||| ||| | |||| || | | ||| || | | Sbjct 23145 TGCGGCGAGATGGTGTC-CAGCATCTCGCTGGCGATGGGC--AT-GCCAGCGTTCGTC-A 23199 Query 1726911 GATCGCGCAACAGGCGGCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGA 1726970 | ||| |||| | |||||| | || || | | | | | || ||||| Sbjct 23200 GGTCGACGAACATCTGCCGCGACACGCGGAGCCCTTTGTTGATCTTGAAGGAGTTGTCGA 23259 Query 1726971 GGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGG 1727030 |||||||||| || ||||||||||| |||||||| || | ||||| |||| ||||| Sbjct 23260 TGTCGGGGTCGTTGATGAGGCCCTTCCAGCCGACGGTTGTTCTGGGCTTCTCGAGATAGG 23319 Query 1727031 CGCGCATGAC 1727040 ||||||| || Sbjct 23320 CGCGCATCAC 23329 Score = 100 bits (110), Expect = 3e-15 Identities = 109/144 (76%), Gaps = 8/144 (6%) Strand=Plus/Plus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTC----GCAACGTGCCGGCAGGCCTC 19100 |||||||||| |||||||| ||| || |||||| | ||||| || | ||||| Sbjct 26869 AGGACAGCATTGGCGGCACTGTG----GCTTGTGTCATCAGAAACGTCCCCACTGGCCTG 26924 Query 19101 GGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCG 19160 || |||||||||||||||||| | || || ||| ||||| ||||||||| || || Sbjct 26925 GGTGAGCCGTGCTTTGACAAGCTTGAAGCGAAGCTTGCCCATGCCATGCTGAGCATACCT 26984 Query 19161 GCCACCAAGGGATTCGAGATTGGC 19184 || ||||| || || ||||||||| Sbjct 26985 GCGACCAAAGGGTTTGAGATTGGC 27008 Score = 91.5 bits (100), Expect = 2e-12 Identities = 202/299 (68%), Gaps = 8/299 (3%) Strand=Plus/Plus Query 18120 CGTCGGCTGC-ATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCC 18178 |||||| ||| ||| ||||||| || ||| || | | || ||||| | || || | Sbjct 26188 CGTCGG-TGCTATCGTCGACGGTTGTCCTCCGGGCCTACGCCTCACCGAGACGGATATTC 26246 Query 18179 AGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGC 18238 |||| || || || ||||| || || || |||| | ||||||| ||||| ||| Sbjct 26247 AGCCGCAACTGACACGACGCCGCCCCGGTCAAAGCGCCATCACCACGCCACGCAATGAGA 26306 Query 18239 CCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCG 18298 || |||||| |||||||||||||||||| |||| |||| || ||| | || ||| Sbjct 26307 AAGACCGCGTCGAAATCCAGTCGGGCACGGAGTTCGGCGTCACTCTGGGCACCCCTATCG 26366 Query 18299 GCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGG--- 18355 |||| |||| || ||||||| |||| |||||| | ||| | | || Sbjct 26367 GCCTGCGTGTGATGAATGAGAACCAGCGCCCCGGAGACTATGGCAACAAGACGATGGATC 26426 Query 18356 TG---CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCG 18411 || || |||| ||||| || | || ||| ||| || |||||| |||||||| Sbjct 26427 TGTATCCCAGGCCTAGCCACGCTGATTGGACGTACCTGGAGAAATACGGCGTCAAGGCG 26485 >seq906 Length=144635 Score = 102 bits (112), Expect = 1e-15 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| |||||||| || |||| ||| | || |||||||| || | |||||||||| Sbjct 63312 CTGGTCAACGTAGCGGGCAGTGTTGTTGTACACACGGAGCATAGGGATGAGGCCGTTGCT 63371 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||| || || || | |||| ||| | ||| || | ||| || | || Sbjct 63372 GGTGCCGTTAGTACCGGCAATGTAGCTGCCAGTGGCACGGATGCGGTGAACGTTCAGACC 63431 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || ||||| | ||||||||| | || || || || ||||||||||| ||||| Sbjct 63432 GATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTCAGGGTGTCGTAGATACCCTC 63491 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGA 1630280 || || |||||||||| | ||| ||||| || Sbjct 63492 AATGCTATCCTCCTTCATGTCGATGAGGAAGCAAGA 63527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106769088279670