Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10-
07] 4,510 sequences; 46,345,754 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1088 187 3e-41
seq4397 172 7e-37
seq3338 116 5e-20
seq343 116 5e-20
seq906 102 1e-15
>seq1088
Length=3899
Score = 187 bits (206), Expect = 3e-41
Identities = 344/498 (69%), Gaps = 10/498 (2%)
Strand=Plus/Minus
Query 1852159 CGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 1852218
||| | ||| || ||||| ||||| || ||||||||||| | || || || ||||
Sbjct 2527 CGCTAGGGCGAAGATCTTCCGCTGATCCACGCCGCCAAACTGCACATCCACATCCAGGTA 2468
Query 1852219 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTG-CGGT 1852277
|||||||||||||||||||||||| ||||||| || | | ||| ||||| ||| | ||
Sbjct 2467 CTGCTCGTCGAGGGCCTGCATGAGAGGGTAGATCAGGCCGGACAGTAGCGGATTGTCCGT 2408
Query 1852278 CCATCTTGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGC-CGGTGCGCACG-TGCGCC 1852333
| |||||| |||| || | ||| | | ||| ||||| ||||| || | ||| |
Sbjct 2407 CTG-CTTGACGACCTCGGCACCCGCCCTCTTCGCGTCGTGCTCGGTGGTCATGGTGCTC- 2350
Query 1852334 GCGAGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACA 1852393
|| || | ||||| | | |||| | | |||||||||| |||| ||||
Sbjct 2349 ---AGGCGCAACAGGTCCATCATGTAGTCCGGGGACTTCTGGTACTCGCTGCCCAGCACG 2293
Query 1852394 AACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCG 1852453
||||| || | | | | || |||||||| | || |||| | ||||| | ||| |
Sbjct 2292 AACTCCAGACGGTCGACCGACACGCCGACGGCCTTGAGCGACTCGGTGATGACGTACTTG 2233
Query 1852454 TACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCG 1852513
|| | | |||| | ||| || || |||| ||| |||||||||| ||||
Sbjct 2232 TAATACTTGGCGCGGTAATTGACGAGCTCGATGGGCGCCTTCAGGTTGTCGAGGAAGGCG 2173
Query 1852514 TGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTG 1852573
|| | ||||| | ||||||||||| ||||||||||||| || || | || | |||
Sbjct 2172 TGAATATCGGCCAGCAGGATCTTGACGTGACAGCCGGCCTGCAGGAACTGCGCGATCTTG 2113
Query 1852574 AAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATG 1852633
| || ||||| |||||||| |||||| |||| |||| ||| || ||||| || ||
Sbjct 2112 AGCATCGGCACGAAGTAGCCGCAGTGCGGCCTGCCGGTCGTCGCGGTACCCCAGTAGATC 2053
Query 1852634 ATCAGGGGGCGCTCGGCC 1852651
| || || |||||| ||
Sbjct 2052 TTGAGCGGACGCTCGCCC 2035
>seq4397
Length=39634
Score = 172 bits (190), Expect = 7e-37
Identities = 185/245 (76%), Gaps = 0/245 (0%)
Strand=Plus/Minus
Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749
|||||| ||| || || |||||| |||||| ||||| |||||||| | |||||||||
Sbjct 29776 CGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTTGAGCGAGAT 29717
Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809
|||||| | ||| ||||||| || ||||||| ||| | | || |||| | |
Sbjct 29716 GTTCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCCCAGCGCCAC 29657
Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869
||||||||||| || || ||||||||||||||||||||||| ||||||||||| |
Sbjct 29656 CAGCAGGCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGTCGCGTTCATGCCAAG 29597
Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929
|| || || || || | || | | ||||| |||||||||||||| |||||| |||
Sbjct 29596 AAGAGCGACGGGAAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAGCCTCGGTGAT 29537
Query 868930 GATCT 868934
|||||
Sbjct 29536 GATCT 29532
Score = 109 bits (120), Expect = 7e-18
Identities = 175/251 (70%), Gaps = 3/251 (1%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|| ||||||||||| || |||||||| ||||| ||| | |||| | | |||
Sbjct 29125 GAATGGATGTTCTCCATCATAATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATCTGG 29066
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
||||| |||| || || | ||||||||| |||||||||||| ||||||||
Sbjct 29065 ACCTCGGAGCTGAAGCGTTCGACGAGGTTCTCGTTCACGATGCCGTCAGACGCGGCGAAG 29006
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809
||||| |||||||| ||| ||| ||||||||| ||| ||| || ||||| |
Sbjct 29005 AAAGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGGCGCTTGTTCCAGTCG 28946
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
|| | || || | |||||| || ||||||| || ||||||||||| |||
Sbjct 28945 TGAAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCAGAAAGAAGCCTCGGCCTTCTTG 28886
Query 869870 TACATCTCCCA 869880
||||||| |||
Sbjct 28885 TACATCTGCCA 28875
Score = 87.8 bits (96), Expect = 2e-11
Identities = 114/156 (73%), Gaps = 9/156 (6%)
Strand=Plus/Minus
Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278
|| ||||||||||| |||||||||||||| || |||| | |||| ||| ||| |||
Sbjct 29421 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAG 29362
Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338
|| ||||||||||| || || | ||||| ||| || ||| |||||| | ||||
Sbjct 29361 ATACCCTCGACGGCCGCGAAAGCAATGAGGCGCGATGCGAAG--GTCGAG----TTCTTG 29308
Query 869339 T---TGATCCACTTCATCGCCCAGTCGGCCTTTTTC 869371
| |||||| | |||||||||||||| |||
Sbjct 29307 TCGCAGATCCAACGAAGGGCCCAGTCGGCCTTCTTC 29272
>seq3338
Length=114352
Score = 116 bits (128), Expect = 5e-20
Identities = 141/190 (74%), Gaps = 3/190 (2%)
Strand=Plus/Plus
Query 1726965 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 1727024
|||| | ||| |||||| || |||||||||||| |||||||| ||||| ||||| ||||
Sbjct 63341 CGTCAATGTCCGGGTCGTTGATCAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGA 63400
Query 1727025 CATAGGCGCGCATGACCACGCAAAGCGCGTCGCCGACCTCGTCTCGGACAAAGGCGCGCA 1727084
||||||||||||| | ||| ||| || ||| | || | |||| | | ||| ||
Sbjct 63401 GGTAGGCGCGCATGATGATGCACAGCTCGCCGCTCAGCT--TATCGG-CCAGGGCCTTCA 63457
Query 1727085 GGCGTCGGCCATAGTCGACGACGGCCGCCGGGTCGTGCGCCGAACACGGACCAACGATAA 1727144
|||| || | || |||||| ||| |||||||||| ||| || || || || || |
Sbjct 63458 GGCGCTGGGCGTACTCGACGGCGGTTTCCGGGTCGTGGATCGAGCAGGGGCCGACCATGA 63517
Query 1727145 CCAGCAGCCG 1727154
||||||| ||
Sbjct 63518 CCAGCAGACG 63527
>seq343
Length=154369
Score = 116 bits (128), Expect = 5e-20
Identities = 254/370 (69%), Gaps = 9/370 (2%)
Strand=Plus/Plus
Query 1726674 ATAGAAAGGTATGCGGCTGGGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTC 1726732
|||| ||| ||||| || | |||||| | |||||||| || || || | | |
Sbjct 22966 ATAGGAAGTGGTGCGGGTGCTGGACGGCGCCGATGGCGTCGA-TGGCGACGTCGAAGGAG 23024
Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGC 1726792
|||||||||||||| |||||||||| || | | ||| | || |||| ||||||||||
Sbjct 23025 CCGTCGGTGCCGTTTTTGAAGCCGACGGGGAAGGACAGGCCGGAGGCCAGCTCGCGGTGC 23084
Query 1726793 ACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCAAATA- 1726851
| |||||||||||| ||||||||||| | |||||| | | |||||| || | ||
Sbjct 23085 AGCTGGCTCTCGGTGGTGCGCGCGCCAATGGCGCCGACGGTGATCAGGTCGGCGAGGTAC 23144
Query 1726852 AGGGGCCACCAGAGGACTGAGAAACTCGACGGCCACGGGCTGATCGACGGCG-ACGACGA 1726910
| ||| | | | | || | |||| ||| | |||| || | | ||| || | |
Sbjct 23145 TGCGGCGAGATGGTGTC-CAGCATCTCGCTGGCGATGGGC--AT-GCCAGCGTTCGTC-A 23199
Query 1726911 GATCGCGCAACAGGCGGCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGA 1726970
| ||| |||| | |||||| | || || | | | | | || |||||
Sbjct 23200 GGTCGACGAACATCTGCCGCGACACGCGGAGCCCTTTGTTGATCTTGAAGGAGTTGTCGA 23259
Query 1726971 GGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGG 1727030
|||||||||| || ||||||||||| |||||||| || | ||||| |||| |||||
Sbjct 23260 TGTCGGGGTCGTTGATGAGGCCCTTCCAGCCGACGGTTGTTCTGGGCTTCTCGAGATAGG 23319
Query 1727031 CGCGCATGAC 1727040
||||||| ||
Sbjct 23320 CGCGCATCAC 23329
Score = 100 bits (110), Expect = 3e-15
Identities = 109/144 (76%), Gaps = 8/144 (6%)
Strand=Plus/Plus
Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTC----GCAACGTGCCGGCAGGCCTC 19100
|||||||||| |||||||| ||| || |||||| | ||||| || | |||||
Sbjct 26869 AGGACAGCATTGGCGGCACTGTG----GCTTGTGTCATCAGAAACGTCCCCACTGGCCTG 26924
Query 19101 GGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCG 19160
|| |||||||||||||||||| | || || ||| ||||| ||||||||| || ||
Sbjct 26925 GGTGAGCCGTGCTTTGACAAGCTTGAAGCGAAGCTTGCCCATGCCATGCTGAGCATACCT 26984
Query 19161 GCCACCAAGGGATTCGAGATTGGC 19184
|| ||||| || || |||||||||
Sbjct 26985 GCGACCAAAGGGTTTGAGATTGGC 27008
Score = 91.5 bits (100), Expect = 2e-12
Identities = 202/299 (68%), Gaps = 8/299 (3%)
Strand=Plus/Plus
Query 18120 CGTCGGCTGC-ATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCC 18178
|||||| ||| ||| ||||||| || ||| || | | || ||||| | || || |
Sbjct 26188 CGTCGG-TGCTATCGTCGACGGTTGTCCTCCGGGCCTACGCCTCACCGAGACGGATATTC 26246
Query 18179 AGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGC 18238
|||| || || || ||||| || || || |||| | ||||||| ||||| |||
Sbjct 26247 AGCCGCAACTGACACGACGCCGCCCCGGTCAAAGCGCCATCACCACGCCACGCAATGAGA 26306
Query 18239 CCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCG 18298
|| |||||| |||||||||||||||||| |||| |||| || ||| | || |||
Sbjct 26307 AAGACCGCGTCGAAATCCAGTCGGGCACGGAGTTCGGCGTCACTCTGGGCACCCCTATCG 26366
Query 18299 GCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGG--- 18355
|||| |||| || ||||||| |||| |||||| | ||| | | ||
Sbjct 26367 GCCTGCGTGTGATGAATGAGAACCAGCGCCCCGGAGACTATGGCAACAAGACGATGGATC 26426
Query 18356 TG---CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCG 18411
|| || |||| ||||| || | || ||| ||| || |||||| ||||||||
Sbjct 26427 TGTATCCCAGGCCTAGCCACGCTGATTGGACGTACCTGGAGAAATACGGCGTCAAGGCG 26485
>seq906
Length=144635
Score = 102 bits (112), Expect = 1e-15
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| |||||||| || |||| ||| | || |||||||| || | ||||||||||
Sbjct 63312 CTGGTCAACGTAGCGGGCAGTGTTGTTGTACACACGGAGCATAGGGATGAGGCCGTTGCT 63371
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||| || || || | |||| ||| | ||| || | ||| || | ||
Sbjct 63372 GGTGCCGTTAGTACCGGCAATGTAGCTGCCAGTGGCACGGATGCGGTGAACGTTCAGACC 63431
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| || ||||| | ||||||||| | || || || || ||||||||||| |||||
Sbjct 63432 GATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTCAGGGTGTCGTAGATACCCTC 63491
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGA 1630280
|| || |||||||||| | ||| ||||| ||
Sbjct 63492 AATGCTATCCTCCTTCATGTCGATGAGGAAGCAAGA 63527
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106769088279670
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