Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10- 07] 4,510 sequences; 46,345,754 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1088 199 6e-45 seq4397 185 1e-40 seq343 114 2e-19 seq3338 87.8 3e-11 >seq1088 Length=3899 Score = 199 bits (220), Expect = 6e-45 Identities = 349/498 (70%), Gaps = 10/498 (2%) Strand=Plus/Minus Query 2411502 CGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 2411561 ||| | ||| |||||||| ||||| || ||||||||||| | || || || |||| Sbjct 2527 CGCTAGGGCGAAGATCTTCCGCTGATCCACGCCGCCAAACTGCACATCCACATCCAGGTA 2468 Query 2411562 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTG-CGGT 2411620 |||||||||||||||||||||||| ||||||| ||| | || |||| ||| | || Sbjct 2467 CTGCTCGTCGAGGGCCTGCATGAGAGGGTAGATCAGGCCGGACAGTAGCGGATTGTCCGT 2408 Query 2411621 CCATCTTGACCACCTGGGCGGCGGCC--TTTTGCGCCGTGC-CGACGGTCACGCGCGCCG 2411677 | |||||| |||| ||| | ||| || ||| ||||| || ||||| | | || Sbjct 2407 -CTGCTTGACGACCTCGGCACCCGCCCTCTTCGCGTCGTGCTCGGTGGTCATG-GTGC-- 2352 Query 2411678 TCAGGCGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAA 2411737 |||||||||| ||||| | | ||||| | | | | |||||| |||||||| |||| | Sbjct 2351 TCAGGCGCAACAGGTCCATCATGTAGTCCGGGGACTTCTGGTACTCGCTGCCCAGCACGA 2292 Query 2411738 ATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGT 2411797 | || ||||| || | || ||||| | | || |||| | ||||| | ||| || Sbjct 2291 ACTCCAGACGGTCGACCGACACGCCGACGGCCTTGAGCGACTCGGTGATGACGTACTTGT 2232 Query 2411798 ACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGT 2411857 | | | |||| | |||||| || |||| ||| ||||||||| ||||| Sbjct 2231 AATACTTGGCGCGGTAATTGACGAGCTCGATGGGCGCCTTCAGGTTGTCGAGGAAGGCGT 2172 Query 2411858 GCACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAA 2411917 | | ||||| | |||||| | || |||| |||||||| || || | || | || | Sbjct 2171 GAATATCGGCCAGCAGGATCTTGACGTGACAGCCGGCCTGCAGGAACTGCGCGATCTTGA 2112 Query 2411918 AGATGGGCACAAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAATG 2411976 || ||||| |||||||| ||| || ||| |||| |||| |||||| ||||| || || Sbjct 2111 GCATCGGCACGAAGTAGCCGCAG-TGCGGCCTGCCGGTCGTCGCGGTACCCCAGTAGATC 2053 Query 2411977 CAGAGAGGGCGCTCGGCC 2411994 ||| || |||||| || Sbjct 2052 TTGAGCGGACGCTCGCCC 2035 >seq4397 Length=39634 Score = 185 bits (204), Expect = 1e-40 Identities = 192/252 (76%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| |||||||| || || || |||||| |||||| ||||| |||||||| | || Sbjct 29783 TGACACCCGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTTGA 29724 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||| |||||| | ||| ||||||| || ||||| ||||| | || | Sbjct 29723 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCCCA 29664 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 ||| | | ||||||||||| || ||||| || ||||||||||||||||| | ||||||| Sbjct 29663 GCGCCACCAGCAGGCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGTCGCGTTCA 29604 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| | || || ||||| || | || ||| ||||| |||||||||||||| |||| Sbjct 29603 TGCCAAGAAGAGCGACGGGAAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAGCCT 29544 Query 794131 CGATGATGATCT 794142 || ||||||||| Sbjct 29543 CGGTGATGATCT 29532 >seq343 Length=154369 Score = 114 bits (126), Expect = 2e-19 Identities = 212/309 (69%), Gaps = 3/309 (1%) Strand=Plus/Plus Query 2175077 GCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTG 2175136 |||||||||||||||||| || ||||| || || | ||| | || |||| |||||||| Sbjct 23024 GCCGTCGGTGCCGTTTTTGAAGCCGACGGGGAAGGACAGGCCGGAGGCCAGCTCGCGGTG 23083 Query 2175137 CACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCACGCCACGAGGTCTGCCAAATA 2175196 || |||||||||||||||||||||||| | |||||| | | ||||| || | || Sbjct 23084 CAGCTGGCTCTCGGTGGTGCGCGCGCCAATGGCGCCGACGGTGATCAGGTCGGCGAGGTA 23143 Query 2175197 GGGCGCCACCAAAGGGCTGAGAAACTCGACAGCCACGGGCTGGCCGACGTCGACGACCAG 2175256 ||| | | | | || | |||| || | |||| ||| ||| || ||| Sbjct 23144 CTGCGGCGAGATGGTGTCCAGCATCTCGCTGGCGATGGGCATGCCAGCGT--TCG-TCAG 23200 Query 2175257 GTCGCGCAGCAGTCGACGCGATGTGGCGAGGCCGGCGGCCAGGCGGCACGACCCGTCGAG 2175316 |||| | || | ||||| | ||| || | | | | || ||||| Sbjct 23201 GTCGACGAACATCTGCCGCGACACGCGGAGCCCTTTGTTGATCTTGAAGGAGTTGTCGAT 23260 Query 2175317 GTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGC 2175376 |||||||||| || ||||||||||| |||||||| || | ||||| |||| |||||| Sbjct 23261 GTCGGGGTCGTTGATGAGGCCCTTCCAGCCGACGGTTGTTCTGGGCTTCTCGAGATAGGC 23320 Query 2175377 GCGCATGAC 2175385 |||||| || Sbjct 23321 GCGCATCAC 23329 >seq3338 Length=114352 Score = 87.8 bits (96), Expect = 3e-11 Identities = 137/192 (71%), Gaps = 7/192 (4%) Strand=Plus/Plus Query 2175310 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 2175369 |||| | ||| |||||| || |||||||||||| |||||||| ||||| ||||| |||| Sbjct 63341 CGTCAATGTCCGGGTCGTTGATCAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGA 63400 Query 2175370 CATAGGCGCGCATGACCACCAGGAGAGCGTCGCCGACCTCTG--TCTCGGCAAAGGTGCG 2175427 ||||||||||||| | | | ||| |||||| ||| | | ||||| | || Sbjct 63401 GGTAGGCGCGCATGATGA--TGCACAGC-TCGCCG--CTCAGCTTATCGGCCAGGGCCTT 63455 Query 2175428 CAGCCGTCGGCCATACTCGACGATGGCCTGGGGATCGTGCGCCGAACACGGACCGACGAC 2175487 ||| || || | ||||||||| || | || ||||| ||| || || ||||| | Sbjct 63456 CAGGCGCTGGGCGTACTCGACGGCGGTTTCCGGGTCGTGGATCGAGCAGGGGCCGACCAT 63515 Query 2175488 CACCAAGAGACG 2175499 |||| ||||| Sbjct 63516 GACCAGCAGACG 63527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915766650729890