Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10-
07] 4,510 sequences; 46,345,754 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1088 199 6e-45
seq4397 185 1e-40
seq343 114 2e-19
seq3338 87.8 3e-11
>seq1088
Length=3899
Score = 199 bits (220), Expect = 6e-45
Identities = 349/498 (70%), Gaps = 10/498 (2%)
Strand=Plus/Minus
Query 2411502 CGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 2411561
||| | ||| |||||||| ||||| || ||||||||||| | || || || ||||
Sbjct 2527 CGCTAGGGCGAAGATCTTCCGCTGATCCACGCCGCCAAACTGCACATCCACATCCAGGTA 2468
Query 2411562 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTG-CGGT 2411620
|||||||||||||||||||||||| ||||||| ||| | || |||| ||| | ||
Sbjct 2467 CTGCTCGTCGAGGGCCTGCATGAGAGGGTAGATCAGGCCGGACAGTAGCGGATTGTCCGT 2408
Query 2411621 CCATCTTGACCACCTGGGCGGCGGCC--TTTTGCGCCGTGC-CGACGGTCACGCGCGCCG 2411677
| |||||| |||| ||| | ||| || ||| ||||| || ||||| | | ||
Sbjct 2407 -CTGCTTGACGACCTCGGCACCCGCCCTCTTCGCGTCGTGCTCGGTGGTCATG-GTGC-- 2352
Query 2411678 TCAGGCGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAA 2411737
|||||||||| ||||| | | ||||| | | | | |||||| |||||||| |||| |
Sbjct 2351 TCAGGCGCAACAGGTCCATCATGTAGTCCGGGGACTTCTGGTACTCGCTGCCCAGCACGA 2292
Query 2411738 ATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGT 2411797
| || ||||| || | || ||||| | | || |||| | ||||| | ||| ||
Sbjct 2291 ACTCCAGACGGTCGACCGACACGCCGACGGCCTTGAGCGACTCGGTGATGACGTACTTGT 2232
Query 2411798 ACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGT 2411857
| | | |||| | |||||| || |||| ||| ||||||||| |||||
Sbjct 2231 AATACTTGGCGCGGTAATTGACGAGCTCGATGGGCGCCTTCAGGTTGTCGAGGAAGGCGT 2172
Query 2411858 GCACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAA 2411917
| | ||||| | |||||| | || |||| |||||||| || || | || | || |
Sbjct 2171 GAATATCGGCCAGCAGGATCTTGACGTGACAGCCGGCCTGCAGGAACTGCGCGATCTTGA 2112
Query 2411918 AGATGGGCACAAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAATG 2411976
|| ||||| |||||||| ||| || ||| |||| |||| |||||| ||||| || ||
Sbjct 2111 GCATCGGCACGAAGTAGCCGCAG-TGCGGCCTGCCGGTCGTCGCGGTACCCCAGTAGATC 2053
Query 2411977 CAGAGAGGGCGCTCGGCC 2411994
||| || |||||| ||
Sbjct 2052 TTGAGCGGACGCTCGCCC 2035
>seq4397
Length=39634
Score = 185 bits (204), Expect = 1e-40
Identities = 192/252 (76%), Gaps = 0/252 (0%)
Strand=Plus/Minus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| |||||||| || || || |||||| |||||| ||||| |||||||| | ||
Sbjct 29783 TGACACCCGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTTGA 29724
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
||||||| |||||| | ||| ||||||| || ||||| ||||| | || |
Sbjct 29723 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCCCA 29664
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
||| | | ||||||||||| || ||||| || ||||||||||||||||| | |||||||
Sbjct 29663 GCGCCACCAGCAGGCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGTCGCGTTCA 29604
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||| | || || ||||| || | || ||| ||||| |||||||||||||| ||||
Sbjct 29603 TGCCAAGAAGAGCGACGGGAAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAGCCT 29544
Query 794131 CGATGATGATCT 794142
|| |||||||||
Sbjct 29543 CGGTGATGATCT 29532
>seq343
Length=154369
Score = 114 bits (126), Expect = 2e-19
Identities = 212/309 (69%), Gaps = 3/309 (1%)
Strand=Plus/Plus
Query 2175077 GCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTG 2175136
|||||||||||||||||| || ||||| || || | ||| | || |||| ||||||||
Sbjct 23024 GCCGTCGGTGCCGTTTTTGAAGCCGACGGGGAAGGACAGGCCGGAGGCCAGCTCGCGGTG 23083
Query 2175137 CACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCACGCCACGAGGTCTGCCAAATA 2175196
|| |||||||||||||||||||||||| | |||||| | | ||||| || | ||
Sbjct 23084 CAGCTGGCTCTCGGTGGTGCGCGCGCCAATGGCGCCGACGGTGATCAGGTCGGCGAGGTA 23143
Query 2175197 GGGCGCCACCAAAGGGCTGAGAAACTCGACAGCCACGGGCTGGCCGACGTCGACGACCAG 2175256
||| | | | | || | |||| || | |||| ||| ||| || |||
Sbjct 23144 CTGCGGCGAGATGGTGTCCAGCATCTCGCTGGCGATGGGCATGCCAGCGT--TCG-TCAG 23200
Query 2175257 GTCGCGCAGCAGTCGACGCGATGTGGCGAGGCCGGCGGCCAGGCGGCACGACCCGTCGAG 2175316
|||| | || | ||||| | ||| || | | | | || |||||
Sbjct 23201 GTCGACGAACATCTGCCGCGACACGCGGAGCCCTTTGTTGATCTTGAAGGAGTTGTCGAT 23260
Query 2175317 GTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGC 2175376
|||||||||| || ||||||||||| |||||||| || | ||||| |||| ||||||
Sbjct 23261 GTCGGGGTCGTTGATGAGGCCCTTCCAGCCGACGGTTGTTCTGGGCTTCTCGAGATAGGC 23320
Query 2175377 GCGCATGAC 2175385
|||||| ||
Sbjct 23321 GCGCATCAC 23329
>seq3338
Length=114352
Score = 87.8 bits (96), Expect = 3e-11
Identities = 137/192 (71%), Gaps = 7/192 (4%)
Strand=Plus/Plus
Query 2175310 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 2175369
|||| | ||| |||||| || |||||||||||| |||||||| ||||| ||||| ||||
Sbjct 63341 CGTCAATGTCCGGGTCGTTGATCAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGA 63400
Query 2175370 CATAGGCGCGCATGACCACCAGGAGAGCGTCGCCGACCTCTG--TCTCGGCAAAGGTGCG 2175427
||||||||||||| | | | ||| |||||| ||| | | ||||| | ||
Sbjct 63401 GGTAGGCGCGCATGATGA--TGCACAGC-TCGCCG--CTCAGCTTATCGGCCAGGGCCTT 63455
Query 2175428 CAGCCGTCGGCCATACTCGACGATGGCCTGGGGATCGTGCGCCGAACACGGACCGACGAC 2175487
||| || || | ||||||||| || | || ||||| ||| || || ||||| |
Sbjct 63456 CAGGCGCTGGGCGTACTCGACGGCGGTTTCCGGGTCGTGGATCGAGCAGGGGCCGACCAT 63515
Query 2175488 CACCAAGAGACG 2175499
|||| |||||
Sbjct 63516 GACCAGCAGACG 63527
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915766650729890
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |