Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10-
07] 4,510 sequences; 46,345,754 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq4397 82.4 7e-11
>seq4397
Length=39634
Score = 82.4 bits (90), Expect = 7e-11
Identities = 123/175 (70%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 110714 TCGATGATATTATTGTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTTTA 110773
|||| || || | |||||||||| |||| | || ||||| || ||||| |||||
Sbjct 29047 TCGACGAGGTTCTCGTTCACGATGCCGTCAGACGCGGCGAAGAAAGCGAGGACGTGGGAG 28988
Query 110774 AGAAAGAATCGTTCCTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACATG 110833
| ||||| || || | ||||| || ||||||||||| | || |||||||| |
Sbjct 28987 ATGAAGAAGCGCTCGTCATCGTTGAGGCGCTTGTTCCAGTCGTGAAGATCCTTGGAAAGA 28928
Query 110834 TCGATCTCTTCGACCTTCCAGTGACAATCGACCGCCTTCTTGTACGATTGCCAAA 110888
|| ||||| || | ||||| | || | | |||||||||||| |||||||
Sbjct 28927 TCAATCTCCTCAGCAGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATCTGCCAAA 28873
Score = 82.4 bits (90), Expect = 7e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 110032 CTTGTATTCGCCTACACGTTTTTCGAAAAAATTAGTTTTGCCCTCGAGAGATATATTATT 110091
|| ||| || || || || || ||||| || || || ||||| | ||| || || || |
Sbjct 29770 CTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTTGAGCGAGATGTTCTC 29711
Query 110092 CATAAACTCGAAAGGATTGACAGTGTTAAAGTGTTTGTCGTAGCCCAATTCGAATAGCAA 110151
||| || ||||| || ||| | ||| ||| || | || ||||| | | ||||
Sbjct 29710 CATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCCCAGCGCCACCAGCAG 29651
Query 110152 TCGATCCGCCACAAATTCAATATACTCGCACATGGACTGTA-CGTTCATGCCTAACATGG 110210
|| || || || || || || |||| ||||||| | || |||||||||| | | |
Sbjct 29650 GCGGTCAGCAACGAACTCGATGTACTGGCACATG-AGAGTCGCGTTCATGCCAAGAAGAG 29592
Query 110211 CAACTGGTAGAGCGGTAGTaaaaaaaTCCTTTTCAATGTCGACAGCCTC 110259
| || || |||||| || | || ||||| || || |||||||||||
Sbjct 29591 CGACGGGAAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAGCCTC 29543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445069307803200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |