Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10- 07] 4,510 sequences; 46,345,754 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4397 158 2e-32 seq343 109 8e-18 seq906 95.1 2e-13 >seq4397 Length=39634 Score = 158 bits (174), Expect = 2e-32 Identities = 193/258 (75%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577 || |||||||| |||||| |||||||||||||| ||||| ||| || | || || | Sbjct 29529 AGAAGATCATCACCGAGGCTGTCGAGATCGAGAAGGAGTTCCTCACGGACGCTCTTCCCG 29588 Query 1456578 TGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGA 1456637 | || || | ||||||||||| | | ||||||||||||||||| | | || || || || Sbjct 29589 TCGCTCTTCTTGGCATGAACGCGA-CTCTCATGTGCCAGTACATCG-AGTTCGTTGCTGA 29646 Query 1456638 CCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCAT 1456697 ||||||||| | |||||| ||| | ||||| ||||| || ||||||| ||| | Sbjct 29647 CCGCCTGCTGGTGGCGCTGGGCAAC-AAGAAGTACTACAACTCGACCAACCCCTTCGACT 29705 Query 1456698 GGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGT 1456756 |||||| ||||||||| | |||||||| ||||| |||||| |||| ||| || | Sbjct 29706 TCATGGAGAACATCTCGCTCAACGGCAAGACGAACTTCTTCGAGAAGCGCGTTGGTGACT 29765 Query 1456757 ACGCCAAGGCCGGCGTCA 1456774 || ||||| || |||| Sbjct 29766 ACCAGAAGGCGGGTGTCA 29783 Score = 140 bits (154), Expect = 5e-27 Identities = 211/296 (71%), Gaps = 13/296 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| || || ||||| || |||||| | || | Sbjct 28871 GATTTGGCAGATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGATC 28929 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| || | | ||| ||||||||| ||| Sbjct 28930 TTTCCAAGGATCTTCACG----ACTGGAACAAGCGCCTCAACGATGACGAGCGCTTCTTC 28985 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||||||||||| ||| |||||||| || ||||||||| ||||||||| | Sbjct 28986 ATCTCCCACGTCCTCGC-TTTCTTCGCCGCGTCTGACGGCATCGTGAACGAGAACCTCGT 29044 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || ||||| | |||||||| | || ||||| || | || ||||| |||||||| Sbjct 29045 CGAACGCTTCAGCTCCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGAT 29104 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCA 1456063 || || |||||||| ||||| ||||||||||| || |||||||| ||| ||| Sbjct 29105 TATGATGGAGAACATCCATTCTGAGACCTACTCGCTTCTCATCGACACATACATCA 29160 >seq343 Length=154369 Score = 109 bits (120), Expect = 8e-18 Identities = 121/159 (76%), Gaps = 7/159 (4%) Strand=Plus/Minus Query 165750 GCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGC 165809 || |||||| |||| |||||| | || ||||||||||||||||||||| |||||||| Sbjct 23137 GCCGACCTGATCACCGTCGGCGCCATTGGCGCGCGCACCACCGAGAGCCAGCTGCACCGC 23078 Query 165810 GAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGTG 165869 ||| |||| || | ||| | | ||| | |||||||||||| ||||||||||| | | Sbjct 23077 GAGCTGGCCTCCGGCCTGTCCTTCCCCGTCGGCTTCAAAAACGGCACCGACGGCTCCTT- 23019 Query 165870 GCGACG--GCCCTCGATGCCGTGCGCACTGCCGCCCAGC 165906 ||||| ||| |||| ||| | || |||| ||||| Sbjct 23018 -CGACGTCGCCATCGACGCCATCGGC---GCCGTCCAGC 22984 >seq906 Length=144635 Score = 95.1 bits (104), Expect = 2e-13 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 263177 TCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATATGGCGG 263236 ||||||| |||| ||||||||| |||||| | || | || | | || | ||||| | Sbjct 62146 TCAAGGCGCTCTACAAGACCGTCTGGGAGCTTTCCCAGCGCACCATCGTTCAGATGGCCG 62087 Query 263237 CCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCCGA 263296 ||||||| | | | |||| || ||||| ||||| | || | ||||| | Sbjct 62086 CCGACCGTGGTGCGTTCATCGATCAATCGCAGTCCCTCAATATCCACATGAAGGACCCCA 62027 Query 263297 CGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACTGGCA 263356 || | | ||||| ||||||||| | || ||| | ||||||||||| |||| Sbjct 62026 CGATGGGCAAGATCACCTCGATGCACTTCGCTGGTTGGAAGCTTGGCCTCAAGACCGGCA 61967 Query 263357 TGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGATCAGG 263413 ||||||| || ||||||| | ||||||| |||| || ||||| ||||| |||| Sbjct 61966 TGTACTACCTCCGCACCCAGGCCGCTGCTGCTCCCATCCAGTTCACTGTCGACCAGG 61910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177376202210620