Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10-
07] 4,510 sequences; 46,345,754 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq906 89.7 6e-13
seq930 87.8 2e-12
seq4397 86.0 8e-12
>seq906
Length=144635
Score = 89.7 bits (98), Expect = 6e-13
Identities = 296/458 (65%), Gaps = 2/458 (0%)
Strand=Plus/Plus
Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301
|| || || ||||| ||||| ||||| | | |||||||| | ||||| ||
Sbjct 62833 GACGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGACGATTTCGCAGCAC 62892
Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361
| |||||| || ||| || || | ||||| ||||| ||||| |||||| |||
Sbjct 62893 AGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCC 62952
Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-C 111420
||||| | |||| |||| | || || || ||| | | ||| || || | ||| | |
Sbjct 62953 TTGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGATCGCGTACCAGAGC 63012
Query 111421 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 111480
|| | | || ||| | || | || |||||| ||| |||| |||||||||
Sbjct 63013 TTCTGAGCACGG-ACAGTCTCGCGACCACGACCCTCCTTCTCATACTGCTCGTAGAGGGC 63071
Query 111481 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 111540
|| || |||||||| |||||| ||||| || || || || || | || |
Sbjct 63072 CTCGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTAGGGCACATGAGGGT 63131
Query 111541 CCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 111600
||| || | |||||| ||||||||||| || || |||||||| || | | ||
Sbjct 63132 CCAGGTGCCGTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCGTAGAA 63191
Query 111601 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCAT 111660
|| || | | ||| |||| || | || ||||| || | || || || |
Sbjct 63192 AAGGTCACGAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGGTCGAGAAAGCTGAA 63251
Query 111661 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 111698
|| ||| || ||||| ||||| || |||| |||| ||
Sbjct 63252 GACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAG 63289
>seq930
Length=65306
Score = 87.8 bits (96), Expect = 2e-12
Identities = 274/413 (66%), Gaps = 25/413 (6%)
Strand=Plus/Plus
Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599
|| || |||||||| ||||| | ||| || | || |||||||||||| ||||
Sbjct 2438 AAACCGTCCATCTCCGTGAGGATTTGGTTCAGGGTACTTTCTCTCTCATC-GTTGC---- 2492
Query 11600 ATACCACC--AGCACTGCGTTGC-------TTGCCCACCGCATCAATCTCATCAATGAAG 11650
||| || ||| |||| | || ||||| | ||||| || ||||| |||||
Sbjct 2493 -CACCGCCAAAGCTCTGCTTCGCTCTTGATTTGCCGATAGCATCGATTTCATCGATGAAA 2551
Query 11651 ACAATACA-TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACC 11709
| ||| || || || | ||| || || || | || || || || || || || ||
Sbjct 2552 ATAATGCAGGGGGTGCTCTTC-CGCGCTGTTGCGAAAAGGTCACGGACTCTAGAGGGGCC 2610
Query 11710 CACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAGCACTGGATGAATGGGACATTT 11767
||||| || ||||||||||| || | | | || | | || || ||| || || |
Sbjct 2611 GACACCCACGAACATCTCCACGAACTCGGAACCGC-TAACGCT-GAAGAAAGGCACTTGA 2668
Query 11768 GATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGA 11827
|||||||| || |||| ||||| | ||||| || ||||| || ||| | ||||
Sbjct 2669 GATTCACCGGCAGTGGCCTTAGCGAGCAACGTCTTACCGGTACCGGGAGGACCTGAGAGA 2728
Query 11828 AGGGCGCCTCGGGGGATCTTGGCACC--ACTTCCAAAATATCTCTCGGGTTGCTTGAGAA 11885
| ||| || || ||||| |||||||| |||| | | | | | | |||| |||||| |
Sbjct 2729 ATGGCACCACGCGGGATTTTGGCACCGAGCTTCTGATAGA-CAC-CAGGTTCCTTGAGGA 2786
Query 11886 AATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938
|| || | ||| | ||| | |||||| |||| || || |||| |||
Sbjct 2787 AACTGACGAACTCCATGATTTCTTGCTTGGCCTCGTCCATTCCAGCAACGTCA 2839
>seq4397
Length=39634
Score = 86.0 bits (94), Expect = 8e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736
|||||||| || || || || ||||| ||||| | ||| |||||||| || ||||||
Sbjct 29460 CCCTCATCGCGAGAGATGAGCTCATTGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTC 29401
Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796
|| | ||| |||| | | ||| || ||| ||||||||||||||| || ||| ||
Sbjct 29400 TTGAGCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAGATACCCTCGACGGCCGCGAAA 29341
Query 122797 GCAAAAAGGCGTTCGGCGAAGG 122818
|||| ||||| |||||||
Sbjct 29340 GCAATGAGGCGCGATGCGAAGG 29319
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627996594696000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |