Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10- 07] 4,510 sequences; 46,345,754 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq906 89.7 6e-13 seq930 87.8 2e-12 seq4397 86.0 8e-12 >seq906 Length=144635 Score = 89.7 bits (98), Expect = 6e-13 Identities = 296/458 (65%), Gaps = 2/458 (0%) Strand=Plus/Plus Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 || || || ||||| ||||| ||||| | | |||||||| | ||||| || Sbjct 62833 GACGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGACGATTTCGCAGCAC 62892 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 | |||||| || ||| || || | ||||| ||||| ||||| |||||| ||| Sbjct 62893 AGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCC 62952 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-C 111420 ||||| | |||| |||| | || || || ||| | | ||| || || | ||| | | Sbjct 62953 TTGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGATCGCGTACCAGAGC 63012 Query 111421 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 111480 || | | || ||| | || | || |||||| ||| |||| ||||||||| Sbjct 63013 TTCTGAGCACGG-ACAGTCTCGCGACCACGACCCTCCTTCTCATACTGCTCGTAGAGGGC 63071 Query 111481 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 111540 || || |||||||| |||||| ||||| || || || || || | || | Sbjct 63072 CTCGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTAGGGCACATGAGGGT 63131 Query 111541 CCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 111600 ||| || | |||||| ||||||||||| || || |||||||| || | | || Sbjct 63132 CCAGGTGCCGTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCGTAGAA 63191 Query 111601 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCAT 111660 || || | | ||| |||| || | || ||||| || | || || || | Sbjct 63192 AAGGTCACGAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGGTCGAGAAAGCTGAA 63251 Query 111661 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 111698 || ||| || ||||| ||||| || |||| |||| || Sbjct 63252 GACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAG 63289 >seq930 Length=65306 Score = 87.8 bits (96), Expect = 2e-12 Identities = 274/413 (66%), Gaps = 25/413 (6%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || || |||||||| ||||| | ||| || | || |||||||||||| |||| Sbjct 2438 AAACCGTCCATCTCCGTGAGGATTTGGTTCAGGGTACTTTCTCTCTCATC-GTTGC---- 2492 Query 11600 ATACCACC--AGCACTGCGTTGC-------TTGCCCACCGCATCAATCTCATCAATGAAG 11650 ||| || ||| |||| | || ||||| | ||||| || ||||| ||||| Sbjct 2493 -CACCGCCAAAGCTCTGCTTCGCTCTTGATTTGCCGATAGCATCGATTTCATCGATGAAA 2551 Query 11651 ACAATACA-TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACC 11709 | ||| || || || | ||| || || || | || || || || || || || || Sbjct 2552 ATAATGCAGGGGGTGCTCTTC-CGCGCTGTTGCGAAAAGGTCACGGACTCTAGAGGGGCC 2610 Query 11710 CACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAGCACTGGATGAATGGGACATTT 11767 ||||| || ||||||||||| || | | | || | | || || ||| || || | Sbjct 2611 GACACCCACGAACATCTCCACGAACTCGGAACCGC-TAACGCT-GAAGAAAGGCACTTGA 2668 Query 11768 GATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGA 11827 |||||||| || |||| ||||| | ||||| || ||||| || ||| | |||| Sbjct 2669 GATTCACCGGCAGTGGCCTTAGCGAGCAACGTCTTACCGGTACCGGGAGGACCTGAGAGA 2728 Query 11828 AGGGCGCCTCGGGGGATCTTGGCACC--ACTTCCAAAATATCTCTCGGGTTGCTTGAGAA 11885 | ||| || || ||||| |||||||| |||| | | | | | | |||| |||||| | Sbjct 2729 ATGGCACCACGCGGGATTTTGGCACCGAGCTTCTGATAGA-CAC-CAGGTTCCTTGAGGA 2786 Query 11886 AATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 || || | ||| | ||| | |||||| |||| || || |||| ||| Sbjct 2787 AACTGACGAACTCCATGATTTCTTGCTTGGCCTCGTCCATTCCAGCAACGTCA 2839 >seq4397 Length=39634 Score = 86.0 bits (94), Expect = 8e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 |||||||| || || || || ||||| ||||| | ||| |||||||| || |||||| Sbjct 29460 CCCTCATCGCGAGAGATGAGCTCATTGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTC 29401 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| |||| | | ||| || ||| ||||||||||||||| || ||| || Sbjct 29400 TTGAGCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAGATACCCTCGACGGCCGCGAAA 29341 Query 122797 GCAAAAAGGCGTTCGGCGAAGG 122818 |||| ||||| ||||||| Sbjct 29340 GCAATGAGGCGCGATGCGAAGG 29319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627996594696000