Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10- 07] 4,510 sequences; 46,345,754 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1133 138 3e-27 >seq1133 Length=54950 Score = 138 bits (152), Expect = 3e-27 Identities = 710/1121 (63%), Gaps = 21/1121 (2%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || || || ||||| || ||||| | || |||| ||| | ||| || | || | Sbjct 36548 CCTGAGGAGATTTCCTCCATGGTCCTCACCAAGATGAGGGAGACTGCCGAGTCTTACCTC 36607 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 |||| || || | | ||||| | ||||| || ||||| || || || | |||||| Sbjct 36608 GGTGGCACCGTCAACAACGCTGTCGTCACTGTCCCCGCCTACTTCAACGACTCTCAGCGT 36667 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||| || |||||| || | || || || | || || || || Sbjct 36668 CAGGCCACCAAGGATGCCGGTCTCATTGCTGGCCTCAACGTCCTCCGTATCATCAACGAG 36727 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATG---AGTGACCAAGaaaaaaaT 349768 ||||| ||||| || || || || || ||||| || | | | || | || || Sbjct 36728 CCCACCGCTGCTGCTATCGCCTACGGTCTTGACAAGAAGGCCACTGGC---GAGCGCAAC 36784 Query 349769 ATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAG 349828 | || || || ||| | |||||||||||||| ||||| || || || || | || ||| Sbjct 36785 GTCCTGATCTTCGATCTTGGTGGTGGTACTTTCGATGTCTCGCTCCTGACTATCGAGGAG 36844 Query 349829 GGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888 || || || || || || | || || ||||| || || |||||||| || || ||||| Sbjct 36845 GGTATCTTCGAGGTCAAGTCCACCGCCGGTGACACTCACCTTGGTGGTGAGGACTTTGAC 36904 Query 349889 AATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGA 349948 || || || || || || || || ||||| ||| | |||| ||| | ||| Sbjct 36905 AACCGCCTTGTCAACCACTTCGTCAACGAATTCAAGAG-AAAGCACAAAAAGGACTTGAC 36963 Query 349949 GA-TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTT 350007 | || || | || | || || || | ||||| || || ||||| ||||| || | Sbjct 36964 TACCAACGCTCGCGCCCTCCGCCGTCTCCGCACTGCTTGCGAGCGTGCCAAGCGCACCCT 37023 Query 350008 AT-CATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCT 350066 | || || || | || ||||| || || || || || || || || | || |||| Sbjct 37024 GTCCAGCT-CTGCGCAGACCTCCATCGAGATCGACTCCCTGTTCGAGGGTATTGACTTCT 37082 Query 350067 TTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAA 350126 | || || || |||||||| || || || | || ||| || || | | || | Sbjct 37083 ACACCTCCATCACCCGTGCTCGTTTCGAGGAGCTCTGCCAGGACCTCTTCCGCTCCACCA 37142 Query 350127 TGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAAT-GTCCAAAAATCAGATTGATGAA 350185 |||| ||||| || || | ||||| || || | | | || | | | || Sbjct 37143 TGGAGCCTGTCGAGCGTGTCCTCCGTGATGCCAAGATCGACAAGTCCTCCG-TCCACGAG 37201 Query 350186 GTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTT 350245 | || | |||||||| || || ||||| || || | || || | | || || || Sbjct 37202 ATCGTCCTCGTTGGTGGCTCCACCCGTATCCCCAAGATCCAGAAGATGGTTTCCGACTTC 37261 Query 350246 TTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCT 350305 || || ||||| || || | || || || || ||||| || ||||| || |||||| Sbjct 37262 TTCAACGGCAAGGAGCCCAACAAGTCCATCAACCCCGATGAGGCCGTTGCCTACGGTGCT 37321 Query 350306 GCTGTTCAGGCATCTATTTTATCTGGAAATAAGAGTT-CTAAAATT-----GATGATCTA 350359 || || ||||| |||| | || || | | | || || || | | || | Sbjct 37322 GCCGTCCAGGCCGCTATCCTGTCCGG---TGACACTTCCTCCAAGTCCACCAACGAGATT 37378 Query 350360 TTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACT 350419 | || || ||||| |||| || || || || | || || |||||| || |||||| Sbjct 37379 CTGCTTCTCGATGTCGCTCCTCTCTCCCTCGGTATCGAGACCGCTGGTGGTGTCATGACT 37438 Query 350420 GTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTT 350479 ||| || | || | || | || || || |||||| | || || || || Sbjct 37439 CCTCTGATCAAGCGCAACACCACCATTCCCACCAAGAAGTCCGAGGTCTTCTCCACCTTC 37498 Query 350480 GCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAA 350539 || || ||||| | || || || || || || ||||| ||||||||||| || Sbjct 37499 AGCGACAACCAGCCCGGTGTCCTTATCCAGGTCTTCGAGGGTGAGCGTGCTCGCACCAAG 37558 Query 350540 GATAATAATAAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTT 350599 || || || || || | || || | | ||||| || || | || ||| Sbjct 37559 GACAACAACCTGCTCGGCAAGTTCGAGCTCACCGGCATTCCCCCGGCTCCCCGTGGTGTT 37618 Query 350600 CCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTAT 350640 || ||||| || ||| | ||||| ||||| | || ||||| Sbjct 37619 CCCCAGATCGAGGTCACCTTCGACGTTGATGCCAACGGTAT 37659 Score = 100 bits (110), Expect = 9e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || || ||||| || ||||| || || || || | Sbjct 54673 TTTGCATACCACCACGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGT 54614 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | || || ||||| ||||| || || ||||| ||||| || || ||||||| Sbjct 54613 AGTCGCTGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGAT 54554 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 | || ||||| ||||| || ||||| || || ||| || || || || || | || || Sbjct 54553 CCGGGGGAATGCCTTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATGGTGTCCGAC 54495 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | || || || || || | ||||| ||||| Sbjct 54494 GACTCGACCTCGAGGGTGATGGTCTTGCCGGT 54463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515166841971530