Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10-
07] 4,510 sequences; 46,345,754 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq1133 138 3e-27
>seq1133
Length=54950
Score = 138 bits (152), Expect = 3e-27
Identities = 710/1121 (63%), Gaps = 21/1121 (2%)
Strand=Plus/Plus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
|| || || ||||| || ||||| | || |||| ||| | ||| || | || |
Sbjct 36548 CCTGAGGAGATTTCCTCCATGGTCCTCACCAAGATGAGGGAGACTGCCGAGTCTTACCTC 36607
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
|||| || || | | ||||| | ||||| || ||||| || || || | ||||||
Sbjct 36608 GGTGGCACCGTCAACAACGCTGTCGTCACTGTCCCCGCCTACTTCAACGACTCTCAGCGT 36667
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
|| || || ||||| || |||||| || | || || || | || || || ||
Sbjct 36668 CAGGCCACCAAGGATGCCGGTCTCATTGCTGGCCTCAACGTCCTCCGTATCATCAACGAG 36727
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATG---AGTGACCAAGaaaaaaaT 349768
||||| ||||| || || || || || ||||| || | | | || | || ||
Sbjct 36728 CCCACCGCTGCTGCTATCGCCTACGGTCTTGACAAGAAGGCCACTGGC---GAGCGCAAC 36784
Query 349769 ATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAG 349828
| || || || ||| | |||||||||||||| ||||| || || || || | || |||
Sbjct 36785 GTCCTGATCTTCGATCTTGGTGGTGGTACTTTCGATGTCTCGCTCCTGACTATCGAGGAG 36844
Query 349829 GGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888
|| || || || || || | || || ||||| || || |||||||| || || |||||
Sbjct 36845 GGTATCTTCGAGGTCAAGTCCACCGCCGGTGACACTCACCTTGGTGGTGAGGACTTTGAC 36904
Query 349889 AATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGA 349948
|| || || || || || || || ||||| ||| | |||| ||| | |||
Sbjct 36905 AACCGCCTTGTCAACCACTTCGTCAACGAATTCAAGAG-AAAGCACAAAAAGGACTTGAC 36963
Query 349949 GA-TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTT 350007
| || || | || | || || || | ||||| || || ||||| ||||| || |
Sbjct 36964 TACCAACGCTCGCGCCCTCCGCCGTCTCCGCACTGCTTGCGAGCGTGCCAAGCGCACCCT 37023
Query 350008 AT-CATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCT 350066
| || || || | || ||||| || || || || || || || || | || ||||
Sbjct 37024 GTCCAGCT-CTGCGCAGACCTCCATCGAGATCGACTCCCTGTTCGAGGGTATTGACTTCT 37082
Query 350067 TTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAA 350126
| || || || |||||||| || || || | || ||| || || | | || |
Sbjct 37083 ACACCTCCATCACCCGTGCTCGTTTCGAGGAGCTCTGCCAGGACCTCTTCCGCTCCACCA 37142
Query 350127 TGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAAT-GTCCAAAAATCAGATTGATGAA 350185
|||| ||||| || || | ||||| || || | | | || | | | ||
Sbjct 37143 TGGAGCCTGTCGAGCGTGTCCTCCGTGATGCCAAGATCGACAAGTCCTCCG-TCCACGAG 37201
Query 350186 GTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTT 350245
| || | |||||||| || || ||||| || || | || || | | || || ||
Sbjct 37202 ATCGTCCTCGTTGGTGGCTCCACCCGTATCCCCAAGATCCAGAAGATGGTTTCCGACTTC 37261
Query 350246 TTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCT 350305
|| || ||||| || || | || || || || ||||| || ||||| || ||||||
Sbjct 37262 TTCAACGGCAAGGAGCCCAACAAGTCCATCAACCCCGATGAGGCCGTTGCCTACGGTGCT 37321
Query 350306 GCTGTTCAGGCATCTATTTTATCTGGAAATAAGAGTT-CTAAAATT-----GATGATCTA 350359
|| || ||||| |||| | || || | | | || || || | | || |
Sbjct 37322 GCCGTCCAGGCCGCTATCCTGTCCGG---TGACACTTCCTCCAAGTCCACCAACGAGATT 37378
Query 350360 TTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACT 350419
| || || ||||| |||| || || || || | || || |||||| || ||||||
Sbjct 37379 CTGCTTCTCGATGTCGCTCCTCTCTCCCTCGGTATCGAGACCGCTGGTGGTGTCATGACT 37438
Query 350420 GTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTT 350479
||| || | || | || | || || || |||||| | || || || ||
Sbjct 37439 CCTCTGATCAAGCGCAACACCACCATTCCCACCAAGAAGTCCGAGGTCTTCTCCACCTTC 37498
Query 350480 GCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAA 350539
|| || ||||| | || || || || || || ||||| ||||||||||| ||
Sbjct 37499 AGCGACAACCAGCCCGGTGTCCTTATCCAGGTCTTCGAGGGTGAGCGTGCTCGCACCAAG 37558
Query 350540 GATAATAATAAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTT 350599
|| || || || || | || || | | ||||| || || | || |||
Sbjct 37559 GACAACAACCTGCTCGGCAAGTTCGAGCTCACCGGCATTCCCCCGGCTCCCCGTGGTGTT 37618
Query 350600 CCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTAT 350640
|| ||||| || ||| | ||||| ||||| | || |||||
Sbjct 37619 CCCCAGATCGAGGTCACCTTCGACGTTGATGCCAACGGTAT 37659
Score = 100 bits (110), Expect = 9e-16
Identities = 151/212 (71%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || || || ||||| || ||||| || || || || |
Sbjct 54673 TTTGCATACCACCACGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGT 54614
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || | || || ||||| ||||| || || ||||| ||||| || || |||||||
Sbjct 54613 AGTCGCTGAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGAT 54554
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681
| || ||||| ||||| || ||||| || || ||| || || || || || | || ||
Sbjct 54553 CCGGGGGAATGCCTTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATGGTGTCCGAC 54495
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
| || || || || || | ||||| |||||
Sbjct 54494 GACTCGACCTCGAGGGTGATGGTCTTGCCGGT 54463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515166841971530
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |