Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10- 07] 4,510 sequences; 46,345,754 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq906 239 5e-58 seq1133 127 2e-24 seq4234 102 9e-17 seq918 98.7 1e-15 >seq906 Length=144635 Score = 239 bits (264), Expect = 5e-58 Identities = 738/1121 (66%), Gaps = 43/1121 (4%) Strand=Plus/Plus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 ||||||||| | |||| || |||| ||||| || ||| |||||| ||||| || Sbjct 62460 CCACATGTCATATTGCAGAATTCCCTGGGACGCAGGGCTGCCCTGGAACGTTTCGTAAGG 62519 Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660 ||| ||| ||||||| |||||| ||| | | || || ||||| || || ||| || Sbjct 62520 GCCGTCCCTCTTGGCGAGCTCAACCGAGGCAGTGAGAGCAGCGTGGTAGATAGTCTCGAA 62579 Query 80661 GACGCCCTTGTTCACACCGCGCG-CCTGTGGGTCGTCGAACGACAAGCCCATCATCATGA 80719 || |||||| | || | ||| || ||||||| || | | | || Sbjct 62580 GATTTGAATGTTCAG-CTGCTTGGCCTCAGGAGAATCGAACGGCATACGAAGAGCAAGGA 62638 Query 80720 ACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCT 80779 | ||||||| || || | || || | ||||| || ||||| ||| |||| | || Sbjct 62639 AAGCGTCAGCAAGACCGTTGACACCAACAGCGATAGGACGGTGACGCATGTT-GCTCTTC 62697 Query 80780 C-GGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT-AAC 80837 | ||| || |||| |||||| |||| | || |||| |||||| || | || || Sbjct 62698 CTGGCTTCTGGAACTGGGTAGTGGTTAATGTCAATGATCTTGTTCAGATT-CTTGACAAG 62756 Query 80838 AACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGG--TTCCCCTTCA----CAAA 80891 ||| | ||||| || ||||| |||| |||||| | |||| | || | || Sbjct 62757 CACCTGAGTAACCTCGTGAAGCTTCTTGAAGTCGTAGACACCTTCCTCGACATCGACGAA 62816 Query 80892 TGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTC 80951 | || || ||| ||||| | |||||||| || || || |||| | | || |||| Sbjct 62817 GGTGGGTAGCGCCAGAGACGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTC 62876 Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011 ||||||||| ||||| || || ||| || || ||||| |||||||| ||| Sbjct 62877 GACGATTTCGCAGCACAGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTT 62936 Query 81012 GGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAG 81071 | |||||| ||||||||| ||||| | ||| ||||||| |||||||| | || ||| Sbjct 62937 GCGGTTGCAGTGGTCCTTGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAG 62996 Query 81072 GATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATA 81131 ||| |||| ||| | || | || ||| || ||| || || | |||| Sbjct 62997 GATCGCGTACCAGAGCTTCTGAGCACGGACAGTCTCGCGACCACGACCCTCCTTCTCATA 63056 Query 81132 CTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTT 81191 || |||| | ||||| | |||| | | || | || | ||||||||||| Sbjct 63057 CTGCTCGTAGAGGGCCTCGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTT 63116 Query 81192 AGGGCACATCAGGTGCCAGTCGGTGTCGTT---CTCTACAGCCTTCATGAAAGCGTCAGG 81248 ||||||||| ||| ||| |||| |||| ||| ||| ||||||||| || || Sbjct 63117 AGGGCACATGAGGGTCCA---GGTGCCGTTCTGCTCAACACGCTTCATGAAGAGATCGGG 63173 Query 81249 GATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGG 81306 |||||||| ||| ||| ||||| || |||||| ||||||| | || ||||| Sbjct 63174 AATCCAGAGAGCGTAGAAAAGGTCACG--AGCGCGAACCTCCTCTTTTCCGTGGTTCTTA 63231 Query 81307 CGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGAC 81366 || | ||||||||| | || || |||||||| ||||| || || | ||||| | Sbjct 63232 CGGAGGTCGAGAAAGCTGAAGACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAGCA 63291 Query 81367 CCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423 || ||| | |||||||||| ||||| |||||||| ||| | ||||| | | Sbjct 63292 CCGGGGCGCTTGTTACCACCCTGGTCAACGTAGCGGGCAGTGTTGTTGTACACACGGAGC 63351 Query 81424 ATAGGGATGATACCATCTGACTG--ACCGTTCGTACCCACGATACGCGACCCCTTGGCGC 81481 |||||||||| || | || ||| ||||| ||||| | || || |||| | Sbjct 63352 ATAGGGATGAGGCCGT-TG-CTGGTGCCGTTAGTACCGGCAATGTAGCTGCCAGTGGCAC 63409 Query 81482 GCACCTTGCTGATTGAA-----AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACA 81536 | | ||| | |||| |||||||| ||||| | ||| || ||| ||||| Sbjct 63410 GGA---TGCGG--TGAACGTTCAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACA 63464 Query 81537 CCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACA 81596 |||| ||| || || || ||||| |||||||| | |||||||| | | ||| || Sbjct 63465 GGTCTTCAGGGTGTCGTAGATACCCTCAATGCTATCCTCCTTCATGTCGATGAGGAAGCA 63524 Query 81597 GCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAG 81635 | || |||||| || ||| || ||||||||||| Sbjct 63525 AGAAGCCAACTGAGG--CTTGGGAGTACCAGCATTGAACAG 63563 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| ||||||||||| |||||| || | |||| Sbjct 61945 GCCTGGGTGCGGAGGTAGTACATGCCGGTCTTGAGGCCAAGCTTCCAACCAGCGAAGTGC 62004 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || || ||| ||| | | ||||||| || |||| ||| || || ||||| || ||| Sbjct 62005 ATCGAGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATATTGAGGGACTGCGATTGA 62064 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCAT 80180 |||||| || ||||| || || ||||| Sbjct 62065 TCGATGAACGCACCACGGTCGGCGGCCAT 62093 >seq1133 Length=54950 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || || ||||| ||||| | || | ||| | || | ||| Sbjct 54746 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCGAGCGACACCATCGACAACGTCAAGAGC 54805 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| ||||| || ||||||||||| || ||||| || || ||| Sbjct 54806 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCCGGCAAG 54865 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||| | || || || | ||||| || |||| ||||| |||||| || Sbjct 54866 CAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGAGCACTCTCCAC 54925 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | ||||| ||||| || Sbjct 54926 CTCGTCCTCCGTCTCCGCGGCGG 54948 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || || ||||| ||||| || | ||| | || | ||| Sbjct 54463 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACGTCAAGAGC 54522 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||| || ||||| || || |||||||| || || || ||||| ||| Sbjct 54523 AAGATCCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCCTCATCTTCGCTGGCAAG 54582 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 || || ||||||| || || || ||| ||||| || |||| ||||| || || ||||| Sbjct 54583 CAGCTTGAGGATGGCCGCACTCTCAGC-GACTACAACATCCAGAAGGAGTCGACCCTTCA 54641 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || || ||||| Sbjct 54642 CCTCGTCCTCCGCCTGCGTGGTGG 54665 >seq4234 Length=93090 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| ||||| || |||||||||||||| || || || || ||||| |||||| Sbjct 35831 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCGGGCAAGCAGCTCGAG 35772 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || || || | ||||| || |||| ||||| || || ||||| || || | Sbjct 35771 GATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTTGTGCTC 35712 Query 27619 CGTCTTCGCGGTGG 27632 || || || ||||| Sbjct 35711 CGCCTGCGTGGTGG 35698 >seq918 Length=42270 Score = 98.7 bits (108), Expect = 1e-15 Identities = 269/412 (65%), Gaps = 0/412 (0%) Strand=Plus/Plus Query 31991 TCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACA 32050 ||||||| || ||||||||| | ||| ||||| |||||||||| ||| || |||| Sbjct 23590 TCAAGCCGGGTCAACGCAAGGTGCTTTACACCTGCTTCAAGAAGAATCTGAGGAAGGACA 23649 Query 32051 TGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGG 32110 | ||||| |||| | || | || | || || |||| | |||| || | Sbjct 23650 TCAAGGTCAACGAGCTCGCCGGTTTTGTTGGAGGCTTGACCAACTATGCCTACGGTGATG 23709 Query 32111 CGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGA 32170 | || |||||| || ||||| || ||||| ||||| || || | || || | | Sbjct 23710 CCTCACTCCAGCAAACGATTGTTGGTCTGGCTCAAAACTTCGTTGGCTCCAACAATATCA 23769 Query 32171 ACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGA 32230 | || || ||||| || | || || | || || || || | |||||||| | Sbjct 23770 ATTTGCTTGAGCCTAGCGGTAACTTCGGTTCTCGTATCCAGGGCGGTAGCGATGCTGCCA 23829 Query 32231 GCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGG 32290 || |||||||||| | ||| || || | || | || || ||||| || || | Sbjct 23830 GCGCCCGTTACATTTACACGCGACTTTCTCCGCTTGCCCGTAAACTTTTCCACGTATCCG 23889 Query 32291 ACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACA 32350 | || || |||| || || || |||||||| ||| ||||||| | ||| Sbjct 23890 ATGAGCCGCTGCTTGAGCACGATCAGGATGACGGAAAGCCAATCGAGCCAACCATGTACG 23949 Query 32351 GTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGG 32402 ||| | |||||||||||| | |||||||| || || || ||||| || || Sbjct 23950 TTCCTATTCTTCCGATGATCCTTGTGAACGGCGCGGACGGTATCGGCACTGG 24001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570278248751200