Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10- 07] 4,510 sequences; 46,345,754 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq671 127 2e-24 >seq671 Length=69493 Score = 127 bits (140), Expect = 2e-24 Identities = 209/299 (70%), Gaps = 2/299 (1%) Strand=Plus/Plus Query 6726 CGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785 |||| ||||| || || ||||||| ||||| || |||||| || ||| || Sbjct 26903 CGACATAGAACTGCGCGAACATGTGGCAAGGGGGCAGAGCCATCTTCTTCAGGTCCGCCG 26962 Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845 | |||||||||| ||| | ||| | | || | || || ||| | ||||||||| Sbjct 26963 GATTCCACGCGCTCATGATGATGCGGCGATCGTACGGCTTGTTCTTAAGCTTGTCGATCA 27022 Query 6846 CGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCC 6904 | | | |||||| ||| | || |||||| ||||||| | |||| || || ||||| Sbjct 27023 CATCCGCCAGCTGATCCACACCTTGTCCCCTGTAGTCCGTCGTCGCGTCCACG-TACTCA 27081 Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGAT 6964 || || ||||| | ||||||||| |||||||| ||||| | |||||||||||| || Sbjct 27082 GCGCCGAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCTAGGTCGCCCTCCTCGCGGTGC 27141 Query 6965 GGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023 | || || |||| || || || || || |||| | | ||||||||||| || || Sbjct 27142 GAGAGGCCGACACTGTCGAGGAACTCGCGCGATCCGTTACCATCCCAGATCTTGACGCC 27200 Score = 127 bits (140), Expect = 2e-24 Identities = 209/299 (70%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 || || ||||||||||| | | |||| || || || || || |||| || || | Sbjct 27200 GGCGTCAAGATCTGGGATGGTAACGGATCGCGCGAGTTCCTCGACAGTGTCGGCCTCTCG 27141 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 || |||||||||||| | ||||| |||||||| ||||||||| | ||||| || || Sbjct 27140 CACCGCGAGGAGGGCGACCTAGGCCCCGTCTACGGCTTCCAGTGGCGGCACTTCGGCGCT 27081 Query 34442 GAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGT 34500 ||||| || || |||| | ||||||| |||||| || | ||| |||||| | | || Sbjct 27080 GAGTA-CGTGGACGCGACGACGGACTACAGGGGACAAGGTGTGGATCAGCTGGCGGATGT 27022 Query 34501 GATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCC 34560 |||||||| | ||| || || | || | | ||| | ||| |||||||||| || Sbjct 27021 GATCGACAAGCTTAAGAACAAGCCGTACGATCGCCGCATCATCATGAGCGCGTGGAATCC 26962 Query 34561 GAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCG 34619 | ||| || |||||| || ||||| ||||||| || || ||||| |||| Sbjct 26961 GGCGGACCTGAAGAAGATGGCTCTGCCCCCTTGCCACATGTTCGCGCAGTTCTATGTCG 26903 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || | ||||| ||||||||||||||| |||||||||||| || || || || Sbjct 26736 GACATGGGCCAACATGTGCGTGAGCAGAGCGTACGAAGCAATGTTGAAGGGAACGCCCAA 26795 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGC 6715 |||||||| | || || || |||||| | ||| |||| Sbjct 26796 GCCCATGTCACAGGACCGCTGGTAGAGCAGACAGTGCAGC 26835 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 34630 GCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACAT 34689 |||| ||| | |||||| || || || | |||||||| || || || || |||||||| Sbjct 26835 GCTGCACTGTCTGCTCTACCAGCGGTCCTGTGACATGGGCTTGGGCGTTCCCTTCAACAT 26776 Query 34690 TGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 |||| ||||||||||||||| ||||| | || |||||| Sbjct 26775 TGCTTCGTACGCTCTGCTCACGCACATGTTGGCCCATGTC 26736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448237129207200