Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307945.1_202015-10- 07] 4,510 sequences; 46,345,754 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1133 132 1e-25 seq4397 111 3e-19 seq4234 105 1e-17 >seq1133 Length=54950 Score = 132 bits (146), Expect = 1e-25 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | || || || |||||||||||||| Sbjct 54666 ACCACCACGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 54607 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || ||||| | || || || || || Sbjct 54606 GAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCCGGGGG 54547 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| || |||||||| |||||| ||||| || ||| | ||||| |||||||| | |||| Sbjct 54546 AATGCCTTCCTTGTCCTGGATC-TTGCTCTTGACGTTGTCGATGGTGTCCGACGACTCGA 54488 Query 283051 CTTCGAGAGTGATCGTCTTACCCGT 283075 | ||||| ||||| ||||| || || Sbjct 54487 CCTCGAGGGTGATGGTCTTGCCGGT 54463 Score = 132 bits (146), Expect = 1e-25 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || || || || || || | ||||| || || |||||||||||||| | Sbjct 54949 ACCGCCGCGGAGACGGAGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGA 54890 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| || |||| || || ||||| || Sbjct 54889 CAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGG 54830 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| ||||||||||| |||||| ||||| || ||| | ||||| ||||| | |||| Sbjct 54829 AATGCCCTCCTTGTCCTGGATC-TTGCTCTTGACGTTGTCGATGGTGTCGCTCGACTCGA 54771 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCA 283077 | ||||| ||||| ||||| || |||| Sbjct 54770 CCTCGAGGGTGATGGTCTTGCCAGTCA 54744 >seq4397 Length=39634 Score = 111 bits (122), Expect = 3e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 230187 GAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTC 230246 || ||||||||| | |||||| |||| | |||| | |||||||| || |||| Sbjct 29558 GAGAAGGAGTTCCTCACGGACGCTCTTCCCGTCGCTCTTCTTGGCATGAACGCGACTCTC 29617 Query 230247 ATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAA 230306 ||| | || || ||||| ||||| ||||| || | | |||||||| || || |||| Sbjct 29618 ATGTGCCAGTACATCGAGTTCGTTGCTGACCGCCTGCTGGTGGCGCTGGGCAACAAGAAG 29677 Query 230307 GTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACT 230366 || ||||| | |||||||||| || |||||| ||| || ||| | || || || Sbjct 29678 TACTACAACTCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAGACG 29737 Query 230367 AACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 ||||||||||| ||||| || | || || || | | | ||||| Sbjct 29738 AACTTCTTCGAGAAGCGCGTTGGTGACTACCAGAAGGCGGGTGT 29781 >seq4234 Length=93090 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | || || || |||||||||||||| | Sbjct 35697 ACCACCACGCAGGCGGAGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 35756 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || ||||||| ||| || ||||| || Sbjct 35757 CAGAGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGG 35816 Query 282992 AATACCCTCCTTGTCT 283007 ||| |||||||||||| Sbjct 35817 AATGCCCTCCTTGTCT 35832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046678714829540