Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10- 07] 4,124 sequences; 47,007,994 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3624 257 1e-63 seq1456 96.9 3e-15 >seq3624 Length=35007 Score = 257 bits (284), Expect = 1e-63 Identities = 481/700 (69%), Gaps = 10/700 (1%) Strand=Plus/Minus Query 23063 GTGTACTCTACAATTTCGGTACATAGATTG---CTACACTTTATCGTGCCCAAATTGCTC 23119 |||||||| || |||||| || || ||| |||| || ||||| | || || Sbjct 24742 GTGTACTCGACGATTTCGCAGCACAGGTTGGAGCTACGA---ATGGTGCCAAGGTTCTTC 24686 Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179 |||||||| || || ||||| |||||||| | |||| | || | || || |||||| Sbjct 24685 TGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAACATGAAGGGGTTACCGGTTTCGACC 24626 Query 23180 TGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTG-CC 23238 || | ||||| |||||| ||| | ||||||| | ||| ||| | || | | || Sbjct 24625 TGGGCCTCGAGGATCGCGTACCAGAGCTTCTGAGCACGGACA-GTCTCGCGACCACGACC 24567 Query 23239 TTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC 23298 || | ||| |||| | ||| | || || ||||| |||| || |||||| || || Sbjct 24566 CTCCTTCTCATACTGCTCGTAGAGGGCCTCGAATTCCTCACCATAGACGTCGGCAAGACC 24507 Query 23299 GGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAA 23358 || | | | || |||||||| |||| | || | ||||| || |||| || Sbjct 24506 AGGGCACTCGTTAGGGCACATGAGGGTCCAGGTGCCGTTCTGCTCAACACGCTTCATGAA 24447 Query 23359 AAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGT 23418 ||||| || ||||| ||||||||||| || || || ||||| ||||||||||| ||| Sbjct 24446 GAGATCGGGAATCCAGAGAGCGTAGAAAAGGTCACGAGCGCGAACCTCCTCTTTTCCGTG 24387 Query 23419 GTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGC 23478 |||||| | || | |||| || || || |||||||||||||||||||| | ||| Sbjct 24386 GTTCTTACGGAGGTCGAGAAAGCTGAAGACATCAGCATGCCACGGCTCGAGGTAGATGGC 24327 Query 23479 AAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACAC 23538 || || || || | ||| || || ||||| || ||||| ||||| |||||||||||||| Sbjct 24326 GAAAGCACCGGGGCGCTTGTTACCACCCTGGTCAACGTAGCGGGCAGTGTTGTTGTACAC 24267 Query 23539 TCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCG-AACCTT 23597 | ||||| || | ||| |||||| | |||| || ||| || | | || Sbjct 24266 ACGGAGCATAGGGATGAGGCCGTTGCTGGTGCCG-TTAGTACCGGCAATGTAGCTGCCAG 24208 Query 23598 TTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGC 23657 | || || | | |||||||| | ||| || || ||| | | || || ||||| || | Sbjct 24207 TGGCACGGATGCGGTGAACGTTCAGACCGATACCACCGGCGGTCTTGGAGATCATGGCAC 24148 Query 23658 ATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAAC 23717 | ||||| ||||||||||| ||||| ||||| ||||| || | ||| | ||| | Sbjct 24147 AGGTCTTCAGGGTGTCGTAGATACCCTCAATGCTATCCTCCTTCATGTCGATGAGGAAGC 24088 Query 23718 ACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAG 23757 | |||| || || | ||||| ||| | || |||||| Sbjct 24087 AAGAAGCCAACTGAGGCTTGGGAGTACCAGCATTGAACAG 24048 >seq1456 Length=54918 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/208 (71%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || ||||| || |||||| |||| || || |||| |||| |||| | ||||| | Sbjct 54431 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACGTCAA---G 54487 Query 31277 AG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 || || | | ||||||||||||| | || || || |||||||| || || ||||||||| Sbjct 54488 AGCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCCTCATCTTCGCTGGC 54547 Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393 || ||| | || || ||| | ||||| || ||||| || || || ||||| ||| Sbjct 54548 AAGCAGCTTGAGGATGGCCGCACTCTCAGCGACTACAACATCCAGAAGGAGTCGACCCTT 54607 Query 31394 CATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || | ||| | || |||| Sbjct 54608 CACCTCGTCCTCCGCCTGCGTGGTGGTA 54635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445743420742080