Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10-
07] 4,124 sequences; 47,007,994 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq3624 257 1e-63
seq1456 96.9 3e-15
>seq3624
Length=35007
Score = 257 bits (284), Expect = 1e-63
Identities = 481/700 (69%), Gaps = 10/700 (1%)
Strand=Plus/Minus
Query 23063 GTGTACTCTACAATTTCGGTACATAGATTG---CTACACTTTATCGTGCCCAAATTGCTC 23119
|||||||| || |||||| || || ||| |||| || ||||| | || ||
Sbjct 24742 GTGTACTCGACGATTTCGCAGCACAGGTTGGAGCTACGA---ATGGTGCCAAGGTTCTTC 24686
Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179
|||||||| || || ||||| |||||||| | |||| | || | || || ||||||
Sbjct 24685 TGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAACATGAAGGGGTTACCGGTTTCGACC 24626
Query 23180 TGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTG-CC 23238
|| | ||||| |||||| ||| | ||||||| | ||| ||| | || | | ||
Sbjct 24625 TGGGCCTCGAGGATCGCGTACCAGAGCTTCTGAGCACGGACA-GTCTCGCGACCACGACC 24567
Query 23239 TTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC 23298
|| | ||| |||| | ||| | || || ||||| |||| || |||||| || ||
Sbjct 24566 CTCCTTCTCATACTGCTCGTAGAGGGCCTCGAATTCCTCACCATAGACGTCGGCAAGACC 24507
Query 23299 GGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAA 23358
|| | | | || |||||||| |||| | || | ||||| || |||| ||
Sbjct 24506 AGGGCACTCGTTAGGGCACATGAGGGTCCAGGTGCCGTTCTGCTCAACACGCTTCATGAA 24447
Query 23359 AAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGT 23418
||||| || ||||| ||||||||||| || || || ||||| ||||||||||| |||
Sbjct 24446 GAGATCGGGAATCCAGAGAGCGTAGAAAAGGTCACGAGCGCGAACCTCCTCTTTTCCGTG 24387
Query 23419 GTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGC 23478
|||||| | || | |||| || || || |||||||||||||||||||| | |||
Sbjct 24386 GTTCTTACGGAGGTCGAGAAAGCTGAAGACATCAGCATGCCACGGCTCGAGGTAGATGGC 24327
Query 23479 AAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACAC 23538
|| || || || | ||| || || ||||| || ||||| ||||| ||||||||||||||
Sbjct 24326 GAAAGCACCGGGGCGCTTGTTACCACCCTGGTCAACGTAGCGGGCAGTGTTGTTGTACAC 24267
Query 23539 TCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCG-AACCTT 23597
| ||||| || | ||| |||||| | |||| || ||| || | | ||
Sbjct 24266 ACGGAGCATAGGGATGAGGCCGTTGCTGGTGCCG-TTAGTACCGGCAATGTAGCTGCCAG 24208
Query 23598 TTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGC 23657
| || || | | |||||||| | ||| || || ||| | | || || ||||| || |
Sbjct 24207 TGGCACGGATGCGGTGAACGTTCAGACCGATACCACCGGCGGTCTTGGAGATCATGGCAC 24148
Query 23658 ATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAAC 23717
| ||||| ||||||||||| ||||| ||||| ||||| || | ||| | ||| |
Sbjct 24147 AGGTCTTCAGGGTGTCGTAGATACCCTCAATGCTATCCTCCTTCATGTCGATGAGGAAGC 24088
Query 23718 ACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAG 23757
| |||| || || | ||||| ||| | || ||||||
Sbjct 24087 AAGAAGCCAACTGAGGCTTGGGAGTACCAGCATTGAACAG 24048
>seq1456
Length=54918
Score = 96.9 bits (106), Expect = 3e-15
Identities = 148/208 (71%), Gaps = 6/208 (3%)
Strand=Plus/Plus
Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276
|| ||||| || |||||| |||| || || |||| |||| |||| | ||||| |
Sbjct 54431 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAACGTCAA---G 54487
Query 31277 AG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333
|| || | | ||||||||||||| | || || || |||||||| || || |||||||||
Sbjct 54488 AGCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCCTCATCTTCGCTGGC 54547
Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393
|| ||| | || || ||| | ||||| || ||||| || || || ||||| |||
Sbjct 54548 AAGCAGCTTGAGGATGGCCGCACTCTCAGCGACTACAACATCCAGAAGGAGTCGACCCTT 54607
Query 31394 CATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| || || || | ||| | || ||||
Sbjct 54608 CACCTCGTCCTCCGCCTGCGTGGTGGTA 54635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445743420742080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |