Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10-
07] 4,124 sequences; 47,007,994 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq3624 102 1e-16
>seq3624
Length=35007
Score = 102 bits (112), Expect = 1e-16
Identities = 267/402 (66%), Gaps = 4/402 (1%)
Strand=Plus/Minus
Query 72437 TAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATT 72496
|||| ||||||||||| || | || |||| |||||||| |||||||| || |
Sbjct 23991 TAGGCGAAGCGTGCGTGAAGTACTTGAGGGACATGAGATTGTAGGTCTCAATGGCCTTCT 23932
Query 72497 CTATATC-CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555
| || || || | || || || || || |||||||| | ||| ||||| || || ||
Sbjct 23931 CAATGTCGTCACCG-TGAATACCGACAGCCACACGCATGATCATCTGCTGCGGCCTCTCG 23873
Query 72556 ACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 72615
| | ||| | || | | ||| || | || | ||| || ||||| || ||
Sbjct 23872 GCAACCTTTCCGTCAATGCGGAGAAGGTACGACCTCTCAAGAGTCTTGAAACCGAAGTAT 23813
Query 72616 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTA 72675
| ||| ||||| || || || | ||| | || ||||| | || | |||||
Sbjct 23812 TGGTACTGGAAGTCGCGGTCATAGACGATAGCGGAGTTGAGCTCCTCGGCGTGCTTGTTG 23753
Query 72676 ACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAAC 72734
|| || || | || | ||| || || || ||||| ||||||| ||||| || || ||
Sbjct 23752 ACAATTTCGAATGT-CTCCTTGGAGATCATGGGAGAGTGTTTCCTGTTTTTGGGGTTGAC 23694
Query 72735 ATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATT 72794
||||||| | | ||| | || || | |||| | || || || | |||||| || ||
Sbjct 23693 ATAGTTGTAGAGATCGGCGATGACAGCCGAAAATTGCTTCTTGGTCTGCTTGTGAAGGTT 23634
Query 72795 TGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836
|| ||||| || | ||| || |||||||| || || |||||
Sbjct 23633 CGACACGGCGATACGGGCAGCAAGAATGGCGTAGTCGGGATG 23592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671104602774240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |