Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10-
07] 4,124 sequences; 47,007,994 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq3624 114 2e-20
seq4009 82.4 1e-10
>seq3624
Length=35007
Score = 114 bits (126), Expect = 2e-20
Identities = 273/410 (67%), Gaps = 2/410 (0%)
Strand=Plus/Minus
Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227
||||| || || | || ||||| | | ||| |||| | || || || |||||
Sbjct 24508 CCAGGGCACTCGTTAGGGCACATGAGGGTCCAGGTGCCGTTCTGCTCAACACGCTTCATG 24449
Query 63228 AAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63286
|||||||| |||||||| ||||| || ||| || || | | | | ||||| |||||
Sbjct 24448 AAGAGATCGGGAATCCAGAGAGCGTAGAAA-AGGTCACGAGCGCGAACCTCCTCTTTTCC 24390
Query 63287 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63346
||||| || ||||| || | | ||||| ||||||||| || | ||| ||
Sbjct 24389 GTGGTTCTTACGGAGGTCGAGAAAGCTGAAGACATCAGCATGCCACGGCTCGAGGTAGAT 24330
Query 63347 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63406
||| | | | || || || ||||| || ||||| || | ||| | || ||||| || ||
Sbjct 24329 GGCGAAAGCACCGGGGCGCTTGTTACCACCCTGGTCAACGTAGCGGGCAGTGTTGTTGTA 24270
Query 63407 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCC 63466
|| | | ||| || || | ||||| | || || ||||||| || ||||| ||
Sbjct 24269 CACACGGAGCATAGGGATGAGGCCGTTGCTGGTGCCGTTAGTACCGGCAATGTAGCTGCC 24210
Query 63467 ACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63526
| ||||||| || || ||||| || || || || | || ||||| | ||
Sbjct 24209 AGTGGCACGGATGCGGTGAACGTTCAGACCGATACCACCGGCGGTCTTGGAGATCATGGC 24150
Query 63527 GCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGT 63576
|| || | ||||| ||||||||||| |||||||| || ||||||
Sbjct 24149 ACAGGTCTTCAGGGTGTCGTAGATACCCTCAATGCTATCCTCCTTCATGT 24100
Score = 111 bits (122), Expect = 2e-19
Identities = 269/402 (67%), Gaps = 4/402 (1%)
Strand=Plus/Minus
Query 63631 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGT 63690
|||| ||||||||||| || | || || | |||||||| |||||||| || |
Sbjct 23991 TAGGCGAAGCGTGCGTGAAGTACTTGAGGGACATGAGATTGTAGGTCTCAATGGCCTTCT 23932
Query 63691 CTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63749
| || || || | ||||| || || || |||||||| | ||| ||||| || || ||
Sbjct 23931 CAATGTCGTCACCG-TGAATACCGACAGCCACACGCATGATCATCTGCTGCGGCCTCTCG 23873
Query 63750 ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63809
| | ||| || || | | ||| || | || | ||| || ||||| || ||
Sbjct 23872 GCAACCTTTCCGTCAATGCGGAGAAGGTACGACCTCTCAAGAGTCTTGAAACCGAAGTAT 23813
Query 63810 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTA 63869
| ||| ||||| || || || | ||| | |||||||| | || | |||||
Sbjct 23812 TGGTACTGGAAGTCGCGGTCATAGACGATAGCGGAGTTGAGCTCCTCGGCGTGCTTGTTG 23753
Query 63870 ACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAAC 63928
|| || || | || | ||| || || || ||||| ||||||| ||||| || || ||
Sbjct 23752 ACAATTTCGAATGT-CTCCTTGGAGATCATGGGAGAGTGTTTCCTGTTTTTGGGGTTGAC 23694
Query 63929 ATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATT 63988
||||||| | | ||| | || || | |||| | || || || | |||||| || ||
Sbjct 23693 ATAGTTGTAGAGATCGGCGATGACAGCCGAAAATTGCTTCTTGGTCTGCTTGTGAAGGTT 23634
Query 63989 TGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030
|| ||||| || | ||| || |||||||| || || |||||
Sbjct 23633 CGACACGGCGATACGGGCAGCAAGAATGGCGTAGTCGGGATG 23592
>seq4009
Length=43835
Score = 82.4 bits (90), Expect = 1e-10
Identities = 113/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354
|||| || || ||||| ||| |||| ||||| || | | || || || |||||
Sbjct 33691 AACAGCAGGCAGGCGAAGTCGGTATGCATGCCCTCATCGCGAGAGATGAGCTCATTGGAG 33632
Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414
|| || | || ||||| ||||||||||| || ||||| || ||||| ||||| || ||
Sbjct 33631 AAAGTCAAACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAAGAGCCG 33572
Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAG 33452
|||||||| || || || || || || ||||| ||
Sbjct 33571 CTGAAGAAGATACCCTCGACGGCCGCGAAAGCAATGAG 33534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622915087071840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |