Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10- 07] 4,124 sequences; 47,007,994 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3624 345 1e-89 >seq3624 Length=35007 Score = 345 bits (382), Expect = 1e-89 Identities = 997/1512 (66%), Gaps = 38/1512 (3%) Strand=Plus/Plus Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 ||| ||||||||| |||| || || ||| || |||||||||| || | | ||||||| Sbjct 24049 TGTTCAATGCTGGTACTCCCAAGCCTCAGTTGGCTTCTTGCTTCCTCATCGACATGAAGG 24108 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | ||| ||| |||||||||| ||||| || |||| ||||| | || ||||||| | Sbjct 24109 AGGATAGCATTGAGGGTATCTACGACACCCTGAAGACCTGTGCCATGATCTCCAAGACCG 24168 Query 363689 CAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGG 363746 | || || || ||| | | || || || | ||||| || | ||| |||||| ||| Sbjct 24169 CCGGTGGTATCGGTCTGAACGTTC-ACCGCATCCGTGCCACTGG-CAGCTACATTGCCGG 24226 Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806 || || | || || || | || ||||| ||||||| |||| ||||| | Sbjct 24227 TACTAACGGCACCAGCAACGGCCTCATCCCTATGCTCCGTGTGTACAACAACACTGCCCG 24286 Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866 ||||| ||||||||||| |||||| || || || || || || |||||||| Sbjct 24287 CTACGTTGACCAGGGTGGTAACAAGCGCCCCGGTGCTTTCGCCATCTACCTCGAGCCGTG 24346 Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926 ||||| ||| | || ||||| || ||||| || ||| ||||||||||| | || Sbjct 24347 GCATGCTGATGTCTTCAGCTTTCTCGACCTCCGTAAGAACCACGGAAAAGAGGAGGTTCG 24406 Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGC 363986 || ||||| || ||||| || || ||| || | || | || |||||||| || ||| | Sbjct 24407 CGCTCGTGACCTTTTCTACGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAG-C 24465 Query 363987 AGGTAAGAAT-TGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGG 364045 || | | ||| | ||| | ||||| |||| || || |||||| |||| || | | Sbjct 24466 AGAACGGCACCTGGACCCTCATGTGCCCTAACGAGTGCCCTGGTCTTGCCGACGTCTATG 24525 Query 364046 GTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAA 364105 |||| || | | || || ||||| ||||||| |||||| | ||| |||| Sbjct 24526 GTGAGGAATTCGAGGCCCTCTACGAGCAGTATGAGAAGGAGGGTCGTGGTCGCGAGACTG 24585 Query 364106 TTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCT 364165 | | || |||||||| |||| || ||| | || | ||| | || || || | |||| Sbjct 24586 TCCGTGCTCAGAAGCTCTGGTACGCGATCCTCGAGGCCCAGGTCGAAACCGGTAACCCCT 24645 Query 364166 ATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTC 364225 ||||||||||| || |||||||||||| ||||||| || ||||||| || |||| Sbjct 24646 TCATGTTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTTGGCACCATTC 24705 Query 364226 AGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTA 364284 | || |||||| || ||| || | || ||||||||||| || || || || Sbjct 24706 -GTAGCTCCAACCTGTGCTGCGAAATCGTCGAGTACACCGCTCCTGATGAAGTCGCTGTG 24764 Query 364285 TGTAACCTTGCGTCGATCGCGCTTCCGGCGTT------TGTAAAAGATGGTACTTTTGAC 364338 || ||| | ||||| | ||||| || | || ||| | || ||| | ||| Sbjct 24765 TGCAACTTAGCGTCTCTGGCGCTACCCACCTTCGTCGATGTCGAGGAAGGTGTCTACGAC 24824 Query 364339 CACCAGCATCTTTATGACGTAACCTATCATGCTACTTG----CAATCTCGACAAGGTTAT 364394 | || | ||| | || || || ||| | | |||| ||||| ||||| | || Sbjct 24825 TTCAAGAAGCTTCACGAGGTTAC---TCA-GGTGCTTGTCAAGAATCTGAACAAGATCAT 24880 Query 364395 CGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGAT 364454 |||| || | || ||| |||| |||||| | || |||||||| || || || Sbjct 24881 TGACATTAACCACTACCCAGTTCCAGAAGCCAGGAAGAGCAACATGCGTCACCGTCCTAT 24940 Query 364455 TGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTC--AAGATGGCATTTGAT 364512 | | ||||||| | || || ||||||| ||| | ||||| ||| | || ||| Sbjct 24941 CGCTGTTGGTGTCAACGGTCTTGCTGACGCTTTCCT--TGCTCTTCGTATGCCGTTCGAT 24998 Query 364513 TCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATG 364572 || ||||| || || || | | ||||| || || || || || || | Sbjct 24999 TCTCCTGAGGCCAAGCAGCTGAACATTCAAATCTTCGAGACTATCTACCACGCTGCTCTC 25058 Query 364573 ACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCT 364632 ||||| ||| ||| | || || | | || ||| || | |||| |||| Sbjct 25059 ACTGCCTCGGTTGAGCTCGCCAAGAGGGACGGCCCTTACGAAACGTTCCAGGGCAGCCCT 25118 Query 364633 CTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAAC 364692 || ||||||| | || | ||| | |||||| || || | | || ||| || Sbjct 25119 GCGTCCCAGGGAATTCTGCAATATGACATGTGGAATAAGACCCCCACCGACCTCTGGGAC 25178 Query 364693 TGGGATACGCT--ACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCC---CTCGTTA 364747 ||||| | ||| | | || | || |||| ||||| ||||||||| |||||| Sbjct 25179 TGGGACA-GCTTGAAG-GCCGAGATTGCCCAGCACGGTACCCGCAACTCCTTGCTCGTT- 25235 Query 364748 CAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAAC 364807 || || |||||||| || || || ||||| ||||| ||| ||||| ||||| | Sbjct 25236 --GCTCCAATGCCCACTGCCTCGACCAGCCAGATTCTCGGCTTCAATGAGTGTTTCGAGC 25293 Query 364808 CGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATA 364867 | | ||| || | || || ||||| || || |||| ||||| | ||| || || Sbjct 25294 CTTATACCTCAAACATCTACTCTCGCCGTGTCCTCGCCGGTGAATTCCAGGTTGTCAACC 25353 Query 364868 AGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGA-CAGCATGAAGAACTAT 364926 || || | ||||| || |||| ||| |||||| ||| ||| ||||||||| Sbjct 25354 CGTGGCTCCTGAAGGACCTCGTTGACCTCGGACTGTGGTCTGATCAG-ATGAAGAACCGC 25412 Query 364927 ATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCT 364986 ||||| ||| | || || ||| | ||| | || || | ||||| || | ||| | Sbjct 25413 ATCATTGCCTCCAACGGCTCTATTCAGCAGATCCCCAACATCCCAGATGACATCAAGGCG 25472 Query 364987 ATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGC 365046 | ||||| ||||| ||||| ||||| ||| || || || | ||||| ||||| || Sbjct 25473 CTCTACAAGACCGTCTGGGAGCTTTCCCAGCGCACCATCGTTCAGATGGCCGCCGACCGT 25532 Query 365047 GGTGCTTTTATC 365058 ||||| || ||| Sbjct 25533 GGTGCGTTCATC 25544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303284732424968