Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10- 07] 4,124 sequences; 47,007,994 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3928 123 5e-23 seq4009 89.7 1e-12 >seq3928 Length=94703 Score = 123 bits (136), Expect = 5e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||||||||| |||| |||||| || || || |||| ||||||||||| ||| Sbjct 4280 GGTGAGGATCTGTGCAACTGCACTTTCTCCCTGGCCTACGGTGCCAAGATTCTGCTCAAC 4221 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| | ||||||||| |||| || ||||| | || ||||| || | Sbjct 4220 CAGACTCACCTGCGTCTGAAGCGTGGCCACCGCTACGGTCTTCTGGGCCCCAACGGTTCC 4161 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 ||||||| ||| || ||||| ||||| |||| ||||| | ||| ||||| | ||| Sbjct 4160 GGTAAGACCACCCTCATGCGTGCCATCAACAACGAGCAGCTTG-AGGGTTTCCCCAAGCA 4102 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || ||||| | ||| || || || ||||||||| | ||||| Sbjct 4101 GTCCGAGGTCAAGACCGTCTACGTCGAGCACGACCTGGACTC 4060 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || |||| |||||||| ||||| ||||| || |||||||| || |||| ||||| Sbjct 3465 CTCCCGTATTGCCGTCATTGGCCCCAACGGTGCTGGCAAGTCTACTCTCGTCAACGTCCT 3406 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 |||||| ||| | ||||| ||| || | | || ||||| || || || Sbjct 3405 GACTGGTGAGCTCATCCCCACTTCGGGTGAGGTCTACCACCACGAGAACATCCGTATTGC 3346 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||| ||| ||||||||| ||||| ||||| || || | | Sbjct 3345 CTACATCAAGCAGCACGCCTTCGCCCACATCGACCACCACTTGGACTCTACCCCCTCCGA 3286 Query 280340 ATACATTCAGTGGCG 280354 ||||| |||||||| Sbjct 3285 GTACATCCAGTGGCG 3271 Score = 84.2 bits (92), Expect = 4e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762 ||||| ||||| |||||||| || || || ||| ||||| | ||| | | || || Sbjct 2876 CACTCCCGCATGCGCGGTCTGTCCGGTGGTCAGCGTGTCAAGGTCGTCCTTGCCGCCTGC 2817 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 || |||||| | |||||| ||||||| || ||||||||||||||||| || ||||| || Sbjct 2816 TC-GTGGCAGCGTCCTCACTTGATCGTCCTTGACGAGCCTACCAACTACCTTGACCGTGA 2758 Score = 84.2 bits (92), Expect = 4e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761 || || || ||||||||||||||||||||||| || | || ||| | || | | ||| Sbjct 3920 TCGCTCTCTGGTGGTTGGAAGATGAAGCTGGCTCTTGCCCGTGCCGT-CTTCGAGGAGCC 3862 Query 279762 -GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCT 279820 ||| | || ||||| || ||||| ||||||||||||||| || ||||| || ||||| Sbjct 3861 CGATATTCTTCTGCTCGACGAGCCCACCAACCACATGGACGTCAAGAACGTTGCTTGGCT 3802 >seq4009 Length=43835 Score = 89.7 bits (98), Expect = 1e-12 Identities = 263/401 (66%), Gaps = 6/401 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| || Sbjct 33949 TCGAAGAAGTTCGTCTTGCCGTTGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTC 33890 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| | ||| | ||| || || || | | |||||| || || ||||| | Sbjct 33889 GAGTTGTAGTACTTCTTGTTGCCCAGCGCCACCAGCAGGCGGTCAGCAACGAACTCGATG 33830 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || | ||||||||||| | | |||| |||| || || || Sbjct 33829 TACTGGCACATGAGAGTCGCGTTCATGCCAAGAAGAGCGAC-GGGAAGAGCGTCCGTGAG 33771 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| ||||| ||| | | || ||||| | || || || | | | | Sbjct 33770 GAACTCCTTCTCGATCTCGACAGCCTCGGTGATGATCTTCTCAACGGATTCGGGGCTGGG 33711 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGG--TGCAGACCCTCGTCG 251859 ||| || | | ||| |||| || | | || || || |||| ||||| ||| Sbjct 33710 CTTCGACTTGATGTGCGAGAACAGCAGGCAGGCGAA--GTCGGTATGCATGCCCTCATCG 33653 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 ||| ||||| ||| ||||| | | || |||||||| | ||||| ||| |||||||| Sbjct 33652 CGAGAGATGAGCTCATTGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTCTTGAGCCAG 33593 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 || || | | || || || ||| | | ||||||||| Sbjct 33592 AAAATGGAGGCGAAAGAGCCGCTGAAGAAGATACCCTCGAC 33552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027782490388284