Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10- 07] 4,124 sequences; 47,007,994 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1456 131 3e-25 seq3928 104 4e-17 seq2231 98.7 2e-15 >seq1456 Length=54918 Score = 131 bits (144), Expect = 3e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || || ||||| || |||||||| || ||| | Sbjct 54633 CCACCACGCAGGCGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTG 54574 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| ||||| | || || || || ||| Sbjct 54573 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCCGGGGGA 54514 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| ||||||| ||||||||||| | || || || Sbjct 54513 ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCCGACGACTCGACC 54454 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | ||||||||| || || |||| Sbjct 54453 TCGAGGGTGATGGTCTTGCCGGTGA 54429 Score = 122 bits (134), Expect = 2e-22 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | || | ||| || ||| ||| || |||||||| || ||||| Sbjct 54916 CCGCCGCGGAGACGGAGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 54857 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || ||||| || ||| Sbjct 54856 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 54797 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||||| ||||||||||| ||| || || || Sbjct 54796 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTC-GCTCGACTCGAC 54738 Query 68414 TTCCAAGGTGATGGTTTTTCCCGT 68437 || | ||||||||| || || || Sbjct 54737 CTCGAGGGTGATGGTCTTGCCAGT 54714 >seq3928 Length=94703 Score = 104 bits (114), Expect = 4e-17 Identities = 666/1043 (64%), Gaps = 54/1043 (5%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | |||||| ||||| ||||| || || ||| ||| || Sbjct 3271 CGCCACTGGATGTACTCGGAGGGGGTAGAGTCCAAGTGGTGGTCGATGTGGGCGAAGGCG 3330 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| || | | || ||| ||| || Sbjct 3331 TGCTGCTTGATGTAGGCAATACGGATGTTCTCGTGGTGGTAGACCTCACCCGAAGTGGGG 3390 Query 225101 -TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || || || || || ||||| |||| ||| |||| |||||| ||||| ||||||||||| Sbjct 3391 ATGAGC-TCACCAGTCAGGACGTTGACGAGAGTAGACTTGCCAGCACCGTTGGGGCCAAT 3449 Query 225160 CACGCCAATCCGGGATGACATTGCAAC-CTGCGAGTTCACGTTGCTGAAGATCTCAGGGC 225218 ||| |||| ||||| | || | | ||| || | | || | |||||| |||| Sbjct 3450 GACGGCAATACGGGA-GCCAAGAGAGCACTGGAAGGTGATGTCGG---AGATCTG-GGGC 3504 Query 225219 C---AGTTT----GGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTG 225271 || | |||| |||| || | | | | ||||| | ||||| Sbjct 3505 TTGGAGGTACCGGGGTACTGGAAGGTCATGTTGCTGACACGGACAATGGCCTTGGCCTTG 3564 Query 225272 GAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTC 225331 | | | |||||| ||||| |||||||||||||||| ||| || | | | | Sbjct 3565 GTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAACTTGAACTCCATCTCGGAGGCACCG 3624 Query 225332 AGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGAGG 225391 || ||||||||||| || || ||| ||||| | || | ||| || || Sbjct 3625 AGCTCGTAGTAAGACTTGGCGGAAGGAACCTTCTTGACGAACTCGGAGATGTTACCACGG 3684 Query 225392 TGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGC-GTCAA 225449 | | ||||||||| | || |||| || | || ||| | | || ||| | Sbjct 3685 TAACGCTTGAGCTTGAAGCGCT---CGTAGTGGATAACGTGCTGG--ATGGTGTTGTCCA 3739 Query 225450 GGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAG--GCCCTTGAGGT 225506 ||| ||||||||||| | |||||||| | || | | || | | ||||| Sbjct 3740 AGAACTTGGAGTCGTGGGAGATGATGATGGAGGTGCAAG---GAGAGTTGAC---GAGGT 3793 Query 225507 GCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGC 225565 | || | |||||| || ||||| |||||||||||||||| || || ||||| || || Sbjct 3794 AC-TGCTCGAGCCAAGCAACGTTCTTGACGTCCATGTGGTTGGTGGGCTCGTCGAGCAGA 3852 Query 225566 AGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCG 225625 || || || | || || || ||| || | |||| ||||||||| ||||| || || Sbjct 3853 AGAATATCGGGCTCCTCGAAGACGGCACGGGCAAGAGCCAGCTTCATCTTCCAACCACCA 3912 Query 225626 GACAGGGAGCCGATTGAAACAGAGTGCTTAGCTT-CGT-CAAAGCCGTACTCCAGGAGCG 225683 || || ||| ||| | | | | || ||| || | || ||| ||||| |||| Sbjct 3913 GAGAGCGAGGTGATGGGAGCCTCGAACT--GCTCGCGAACGAAACCGAACTCCTCGAGCT 3970 Query 225684 T---CTGGATAA-----TGCG-CTCGG-GAGAGCTGCGAGCGGCAACGTTGGGGTCGGAC 225733 | ||||| | || | || || || | | || ||| ||| || || | Sbjct 3971 TGTTCTGGACATCCTCCTGGGTCTTGGTGACACCAGC-AGCCTCAAGCTTCTTCATGGTC 4029 Query 225734 GAGAGGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTAC 225793 || ||| | ||||| || | | | | | ||| | |||||| || ||||| Sbjct 4030 CAGCC--AATGA----CGGTCTGCTCAGTGTCGGCAGAGTCCAGGTCGTGCTCGACGTAG 4083 Query 225794 ACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGG 225853 || ||| || || || | |||||| ||||| ||||| | || || ||||| Sbjct 4084 ACGGTCTTGACCTCGGACTGCTTGGGGAAACCCTCAAGCTGCTCGTTGTTGATGGCACGC 4143 Query 225854 AGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTG 225913 | ||||| |||| || | |||||||| || | || ||||| | | || ||||| Sbjct 4144 ATGAGGGTGGTCTTACCGGAACCGTTGGGGCCCAGAAGACCGTAGCGGTGGCCACGCTTC 4203 Query 225914 ATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAA 225973 | ||| | || ||| || || |||||| |||| ||||| |||||||| ||| Sbjct 4204 AGACGCAGGTGAGTCTGGTTGAGCAGAATCTTGGCACCGTAGGCCAGGGAGAAAGTGCAG 4263 Query 225974 TCGCACAGGTCCTCACCCTCCTC 225996 | |||||| |||||||||||||| Sbjct 4264 TTGCACAGATCCTCACCCTCCTC 4286 >seq2231 Length=128599 Score = 98.7 bits (108), Expect = 2e-15 Identities = 282/431 (65%), Gaps = 2/431 (0%) Strand=Plus/Plus Query 59091 AGTAGAGCATGCCGGACAGGAAGCAGGCCTTTTGGCGGAAGCTCAGATTGGACTTCCAGA 59150 |||| | |||||| |||| | || | || ||| ||| || ||||| |||||| Sbjct 34766 AGTACATCATGCCCGACAAATAACATACTTTCTGGATGAAAGAGAGCTTGGATCTCCAGA 34825 Query 59151 AGTGGGGGTTGGTGCACAGAGTCGTGGAACCCAGCGCCCAACGGTATTGCTGGCTGAAGA 59210 | | || || ||| |||||| |||||||||| ||| || ||||||| ||| | Sbjct 34826 ACTCTGGATTTGTGAGCAGAGTTGTGGAACCCATGCACCAGCGCATTTGCTGGGAGAAAA 34885 Query 59211 ACGACTTGAGCTCGTAGGGGCAAACTCCCTTGGCAAGGTTCAGGGGAATGTACTTGAGCT 59270 ||| | | | || ||||| || || ||||| ||| |||| ||||| || | Sbjct 34886 ACGCGCGGGGATTGTCAGGGCAGACGCCGGCAGCAAGACACAGAGGAACGTACTCGACCG 34945 Query 59271 TCCAGCCGTCGTCAACTACTGCAAAGCCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAG 59330 |||| || |||||| | |||| || |||||||| || ||| | || ||||| | Sbjct 34946 TCCACCCACGGTCAACAGCCCCAAAACCAGTGTGGACATCTTCGGAATATCCGATCTCTG 35005 Query 59331 CAGTGCCGCCGAAAGGTACAAGCGCCTCTCGGCGGTAGACTGCGCATGTCCCGACGCACA 59390 |||||||||| | | || || || || ||||| || || | || ||||| | Sbjct 35006 CAGTGCCGCCCACCTCAGCCAGAGCTTCACGACGGTACACGGCATTGCTGCCCACGCAGA 35065 Query 59391 CGGCGCCGCCAAAGGTGTCGCGAGAAACCTGGATGAAACGGTAGAACAGTTCCTGGACGG 59450 | | | || || || ||| ||||| | | |||||||| || || || || Sbjct 35066 TCGAGGCCCCCCAGCGGTTGCGGTTGACCTGAACAACGCGGTAGAAAAGCTCTTGACAGG 35125 Query 59451 ATCCAGCAGCGCGCTCAACCCAAGTCTGGTCGGGGCGAACCTC-GAAGAACTGGGGGGTC 59509 || ||| | |||| ||||| || || || ||| || || ||||||||| || | | Sbjct 35126 CGCCGGCACCCTGCTCCACCCATGTGTGCTC-AGGCAAAGTTCGGAAGAACTGAGGAGAC 35184 Query 59510 TGCACAATCGC 59520 || || ||||| Sbjct 35185 TGGACGATCGC 35195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921574890365280