Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10- 07] 4,124 sequences; 47,007,994 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1456 304 2e-77 seq3880 100 4e-16 >seq1456 Length=54918 Score = 304 bits (336), Expect = 2e-77 Identities = 682/1017 (67%), Gaps = 17/1017 (2%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | ||| ||||| ||||| | || ||||| || || |||||||||||||| Sbjct 37344 TCACCGGACAGGATAGCGGCCTGGACGGCAGCACCGTAGGCAACGGCCTCATCGGGGTTG 37285 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || | || || | ||| | || || || ||| Sbjct 37284 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAAACCATCTTCTGGATCTTGGGG 37225 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || ||||| || | ||||| || | || || || |||||||| | Sbjct 37224 ATACGGGTGGAGCCACCAACGAGGACGATCTCGTGGACGGAGGACTTGTCGATCTTGGCA 37165 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || |||||||| ||||| ||||| | |||| || || ||| Sbjct 37164 TCACGGAGGACACGCTCGACAGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCAGAGCTCC 37105 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || ||||| |||||||| ||||| || ||||| |||| || ||| | | || || || Sbjct 37104 TCGAAACGAGCACGGGTGATGGAGGTGTAGAAGTCAATACCCTCGAACAGGGAGTCGATC 37045 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || |||| || || || | || | || ||||| || ||||| || || || || Sbjct 37044 TCGATGGAGGTCTGCGCAGAGCTGGACAGGGTGCGCTTGGCACGCTCGCAAGCAGTGCGG 36985 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429 | ||| || ||||| || | ||| | | || || || || || | || || || Sbjct 36984 AGACGGCGGAGGGCGCGAGCGTTGGTAGTCAAGTCCTTTTTGTGCTTTCTCTTGAATTCG 36925 Query 7430 TCAGAGAAGTG-TCGA--AGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486 | |||||| | || ||| | | || || || |||||||| | ||| || || Sbjct 36924 TTGACGAAGTGGTTGACAAGGCGGTTG---TCAAAGTCCTCACCACCAAGGTGAGTGTCA 36868 Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAAC 7546 || ||||| | ||||| || |||||||| | || || | | | ||| ||||| || Sbjct 36867 CCGGCGGTGGACTTGACCTCGAAGATACCCTCCTCGATAGTCAGGAGCGAGACATCGAAA 36808 Query 7547 GTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG-TCGTCTTTG---TTCTTATC 7602 ||||||||||| || || || || || ||||| || ||| | || ||||| || Sbjct 36807 GTACCACCACCAAGATCGAAGATCAGGACGTTG----CGCTCGCCAGTGGCCTTCTTGTC 36752 Query 7603 GAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCC 7662 |||||||| |||||||| || || || || || || || ||||| || ||| ||||| Sbjct 36751 AAGACCGTAGGCGATAGCAGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTGAGGCC 36692 Query 7663 AGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 |||||| | ||||| || || || || || || || ||||| |||||||| ||||| Sbjct 36691 AGCAATGAGACCGGCATCCTTGGTGGCCTGACGCTGAGAGTCGTTGAAGTAGGCGGGGAC 36632 Query 7723 CGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTT 7782 || ||||| |||| |||| | |||||| || || || || | || |||| || Sbjct 36631 AGTGACGACAGCGTTGTTGACGGTGCCACCGAGGTAAGACTCGGCAGTCTCCCTCATCTT 36572 Query 7783 GGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATC 7842 ||| || ||||| || |||||||| |||| | || ||| || || || || || Sbjct 36571 GGTGAGGACCATGGAGGAAATCTCCTCAGGAGTGAAAGTCTTCTCCTCGCCCTTGAACTC 36512 Query 7843 AACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCAT 7902 || | || | ||| || |||| | || |||||| | | | | ||||| Sbjct 36511 GACCTGGATGACGGGCTT-GCCGCTCTTC--TCAATGACCTTAAAGGGGAAGTGCTTCAT 36455 Query 7903 ATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAAC 7962 ||| | ||||||| |||| ||||| | ||||| | |||||| || || || || Sbjct 36454 ATCCGCCTGGACCTCGGGGTCGTCGAACTTGCGGCCGATCAAACGCTTAGCGTCGAAGAC 36395 Query 7963 TGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTC 8019 ||||| | |||||||||||| |||||||| || | ||| ||||| ||||| || Sbjct 36394 GGTGTTGTGGGGGTTCATGGCGACCTGGTTCTTGGCGGAGTCACCGATCAGACGCTC 36338 >seq3880 Length=15246 Score = 100 bits (110), Expect = 4e-16 Identities = 233/345 (68%), Gaps = 11/345 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || ||||| || | ||| || || | || Sbjct 729 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGCCTGGACCTCGAAAACGCCC 788 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG---GTCAAAAATGA-- 7571 | || | | | | |||||||| || ||||||||||| || || | ||||| Sbjct 789 TCGTCGACAGTAAGAATGGAAACATCGAAAGTACCACCACCAAGATCGTAGACAATGATC 848 Query 7572 GTACGTTC-GTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 ||||| || | ||| || ||||| || |||||||| || | ||| ||||| || Sbjct 849 TGGCGTTCAGTCTTGTCATC---CTTCTTGTCCAGACCGTAGGCCAGAGCGGCCGCGGTG 905 Query 7631 GGTTCATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689 || || || | || || || |||| ||||| || ||||| || | || || || || || Sbjct 906 GGCTCGTTGACAACACGGAGGACA-TTCAGACCGGCAATGGTACCGGCGTCCTTGGTAGC 964 Query 7690 TTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTT 7749 || || | ||||| |||||||| || || || || || |||| | || || Sbjct 965 GGCTCTCTGAGCGTCGTTGAAGTAGGCGGGAACAGTGACAACGGCGTTCTGAACAGGCTC 1024 Query 7750 ACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794 ||||| ||| || || | ||| ||||| ||| | |||||||| Sbjct 1025 GCCGAGGTACTGCTCGGCAACATCCTTCATCTTGCTCAGAACCAT 1069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635100058904160