Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10- 07] 4,124 sequences; 47,007,994 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3624 129 7e-25 seq4009 95.1 2e-14 >seq3624 Length=35007 Score = 129 bits (142), Expect = 7e-25 Identities = 426/652 (65%), Gaps = 19/652 (3%) Strand=Plus/Plus Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785 || ||||| |||||||| || | || || || | ||| ||||| || | | ||| Sbjct 24048 CTGTTCAATGCTGGTACTCCCAAGCCTCAGTTGGCTTCTTGCTTCCTCATCGACATGAAG 24107 Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845 |||||| || | || || |||| ||| || | |||||| ||||| ||| Sbjct 24108 GAGGATAGCATTGAGGGTATCTACGACACCCTGAAGACCTGTGCCATGATCTCCAAGACC 24167 Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGT-ATTAGAGG 111904 || ||||||||||| || || | || || | |||| | | | ||| || Sbjct 24168 GCCGGTGGTATCGGTCTGAACGTTCACCGCATCCGTGCCA-CTGGCAGCTACATTGCCGG 24226 Query 111905 TACAAATGGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963 ||| || || | | || | || | || || ||||| || || | ||| ||| || | Sbjct 24227 TACTAACGGCACCAGCA-ACGGCCTCATCCCTATGCTCCGTGTGTACAACAACACTGCCC 24285 Query 111964 GCTATGTAAACCAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATCTTGAGC 112017 |||| || |||| | ||| | |||| || || |||| |||| || |||| Sbjct 24286 GCTACGTTGACCAGGGTGG---TAACAAGCGCCCCGGTGCTTTCGCCATCTACCTCGAGC 24342 Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077 | ||||| || ||| || | || || || | ||| ||||| || | ||||||| Sbjct 24343 CGTGGCATGCTGATGTCTTCAGCTTTCTCGACCTCCGTAAGAACCACGGAAAAGAGGAGG 24402 Query 112078 --CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 112135 |||| | || || || |||| ||||||||||||||| ||||||||||||||| | || Sbjct 24403 TTCGCGCT--CGTGACCTTTTCTACGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGT 24460 Query 112136 TGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGC 112195 |||| ||| |||| ||| | ||| | || || || || || ||||| |||| | Sbjct 24461 TGAGCAGAACGGCACCTGGACCCTCATGTGCCCTAACGAGTGCCCTGGTCTTGCCGACGT 24520 Query 112196 CGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC 112255 | |||||||| || || ||||||||| |||| ||| | || |||| | | Sbjct 24521 CTATGGTGAGGAATTCGAGGCCCTCTACGAGCAGTATGAGAAGGAGGGTCGTGGTCGCGA 24580 Query 112256 GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 112314 ||| || | ||| | || | | ||| | || || ||| || | || ||| || |||| Sbjct 24581 GACTGTCCGTGCT-CAGAAGCTCTGGTACGCGATCCTCGAGGCCCAGGTCGAAACCGGTA 24639 Query 112315 CACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAA 112366 || | ||| | ||||| ||| ||| |||| ||||| || || ||||| Sbjct 24640 ACCCCTTCATGTTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAA 24691 >seq4009 Length=43835 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 102182 GCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTAT 102241 ||| ||| | || || ||| || ||||||||||||||| || || ||| | | || Sbjct 33530 GCGCCTCATTGCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCCTCCAT 33589 Query 102242 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTC 102301 || |||||||||||||| || |||||||| ||| | |||||||| ||||| ||||| Sbjct 33590 TTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTTTGACTTTCTCCAATGAGCTCATCTC 33649 Query 102302 TCGTGACGAGGG 102313 ||| || ||||| Sbjct 33650 TCGCGATGAGGG 33661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620710400729280