Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10- 07] 4,124 sequences; 47,007,994 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3624 147 3e-30 seq3865 116 4e-21 >seq3624 Length=35007 Score = 147 bits (162), Expect = 3e-30 Identities = 486/750 (65%), Gaps = 13/750 (2%) Strand=Plus/Minus Query 110279 TGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCA 110338 |||| || || | |||||| | |||||||||| || || ||||||| || | Sbjct 24792 TGGGTAGCGCCAGAGACGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGA 24733 Query 110339 AAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGG 110398 ||||| |||| |||||| || |||| || | ||||||||| || ||| Sbjct 24732 CGATTTCGCAGCACAGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGC 24673 Query 110399 AGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAA 110458 |||||| ||||| || | |||| | ||| |||| ||||| ||| | || ||| | Sbjct 24672 GGTTGCAGTGGTCCTTGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGA 24613 Query 110459 TGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTAC 110517 | || | ||| | | || | | | ||||||| || | | |||| |||| ||| ||| Sbjct 24612 TCGCGTACCAGAGCTTCTGAG-CACGGACAGTCTCGCGACCACGACCCTCCTTCTCATAC 24554 Query 110518 TTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCG 110577 | ||| | | |||| ||||||| || || || || | |||||| || || Sbjct 24553 TGCTCGTAGAGGGCCTCGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTA 24494 Query 110578 GGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATC 110637 || || | ||||| ||| | || || |||||| | ||||||||| || || |||||| Sbjct 24493 GGGCACATGAGGGTCCAGGTGCCGTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATC 24434 Query 110638 CACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGC 110697 || | || ||||||||||||| ||| |||| || | || ||||| || || Sbjct 24433 CAGAGAGCGTAGAAAAGGTCACGAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGG 24374 Query 110698 TCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGA------TGGAT 110751 || | |||| | || ||| | ||||| || ||||| |||| |||| || Sbjct 24373 TCGAGAAAGCTGAAGACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAGCACCGGGG 24314 Query 110752 CCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATA 110811 | ||| || || |||||| ||| ||||| || ||| ||| | || | ||||||| Sbjct 24313 CGCTTGTTACCAC---CCTGGTCAACGTAGCGGGCAGTGTTGTTGTACACACGGAGCATA 24257 Query 110812 GGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATG 110871 || || | || | | || || ||||| ||| | | ||||||| ||| Sbjct 24256 GGGATGAGGCCGTTGCTGGTGCCGTTAGTACCGGCAATGTAGCTGCCAGTGGCACGGATG 24197 Query 110872 TCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAG 110930 ||| | | || ||| |||||||| || ||| || ||||| ||| | || Sbjct 24196 CGGTGAACGTTCAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCT-TCAG 24138 Query 110931 TGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACAT 110990 || | || ||||| ||||| ||| |||| || | || || |||||||||| || Sbjct 24137 GGTGTCGTAGATACCCTCAATGCTATCCTCCTTCATGTCGATGAGGAAGCAAGAAGCCAA 24078 Query 110991 CTGAGGACGAGGCGTTCCCGCATTGAAGAG 111020 |||||| || || || |||||||| || Sbjct 24077 CTGAGGCTTGGGAGTACCAGCATTGAACAG 24048 >seq3865 Length=68630 Score = 116 bits (128), Expect = 4e-21 Identities = 333/498 (67%), Gaps = 23/498 (5%) Strand=Plus/Plus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 |||||||| || || || | ||||| | |||||| | ||| | ||| || | || Sbjct 2354 TCGAAACGGCCAGGACGCATAAGAGCCTTATCAAGCACATCAGGTCTGTTGGTGCCTGCC 2413 Query 11566 ATGACTACAATGCCAGTCTCAT--TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGA 11623 | || |||| || || | ||| |||||||||||| || ||||| | ||||| | Sbjct 2414 AGAACGACAA--CCTGTTCCGACGTGTTGAAACCGTCCATCTCCGTGAGGATTTGGTTCA 2471 Query 11624 TCGTCTGTTCACGCTCATCGTTGG-AGGGCATACCACCTGCCGAACGCTTC--TTACCGA 11680 || ||| | |||||||||| | || | |||| | ||| || |||| Sbjct 2472 GGGTACTTTCTCTCTCATCGTTGCCACCGCCAAAGCTCTGCTTCGCTCTTGATTTGCCGA 2531 Query 11681 CAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGC---CTGTT-CG 11736 ||| || || ||||||||||| | || || || ||| || | | | ||||| || Sbjct 2532 TAGCATCGATTTCATCGATGAAAATAATGCAGGG--GGT--GCTCTTCCGCGCTGTTGCG 2587 Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--CGG 11794 ||||| ||||| || | | || ||||| ||||||||||| ||||| | | | | Sbjct 2588 AAAAGGTCACGGACTCTAGAGGGGCCGACACCCACGAACATCTCCACGAACTCGGAACCG 2647 Query 11795 CAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854 | ||| ||||| ||| || || | ||| ||||| || |||| |||||| | |||| Sbjct 2648 C-TAACGCTGAA-GAAAGGCACTTGAGATTCACCGGCAGTGGCCTTAGCGAGCAACGTCT 2705 Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTCC 11912 |||| ||||| || | ||| | ||||| ||| ||||| ||||| |||||||| |||| Sbjct 2706 TACCGGTACCGGGAGGACCTGAGAGAATGGCACCACGCGGGATTTTGGCACCGAGCTTCT 2765 Query 11913 AAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGA 11972 | ||| |||| | ||||||||| || | |||| | ||| | |||||| Sbjct 2766 GA--TAGACACCAGGTTCCTTGAGGAAACTGACGAACTCCATGATTTCTTGCTTGGCCTC 2823 Query 11973 GTCGATACCCTCAACATC 11990 ||| || || |||| || Sbjct 2824 GTCCATTCCAGCAACGTC 2841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588945638287200