Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10-
07] 4,124 sequences; 47,007,994 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq3624 102 1e-16
seq4009 86.0 7e-12
seq3865 82.4 9e-11
>seq3624
Length=35007
Score = 102 bits (112), Expect = 1e-16
Identities = 299/458 (65%), Gaps = 2/458 (0%)
Strand=Plus/Minus
Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528
|| || || ||||| ||||| ||||| | | |||||||| | ||||| |||
Sbjct 24778 GACGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGACGATTTCGCAGCAC 24719
Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588
| |||||| || ||| || || | ||||| ||||| ||||| |||||| |||
Sbjct 24718 AGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCC 24659
Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-C 106647
||||| | |||| |||| | || || || ||| | || ||| || || | ||| | |
Sbjct 24658 TTGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGATCGCGTACCAGAGC 24599
Query 106648 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 106707
|| | | || ||| | || | || |||||| ||| |||| |||||||||
Sbjct 24598 TTCTGAGCACGG-ACAGTCTCGCGACCACGACCCTCCTTCTCATACTGCTCGTAGAGGGC 24540
Query 106708 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 106767
|| || |||||||| |||||| ||||| || || || || || | || |
Sbjct 24539 CTCGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTAGGGCACATGAGGGT 24480
Query 106768 CCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 106827
||| || || |||||| ||||||||||| || || |||||||| || | | ||
Sbjct 24479 CCAGGTGCCGTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCGTAGAA 24420
Query 106828 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCAT 106887
|| || | | ||| |||| || | || ||||| || | || || || |
Sbjct 24419 AAGGTCACGAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGGTCGAGAAAGCTGAA 24360
Query 106888 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 106925
|| ||| || ||||| ||||| || |||| |||| ||
Sbjct 24359 GACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAG 24322
>seq4009
Length=43835
Score = 86.0 bits (94), Expect = 7e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351
|||||||| || || || || ||||| ||||| | || |||||||| || ||||||
Sbjct 33661 CCCTCATCGCGAGAGATGAGCTCATTGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTC 33602
Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411
|| | ||| |||| | | ||| || ||| ||||||||||||||| || ||| ||
Sbjct 33601 TTGAGCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAGATACCCTCGACGGCCGCGAAA 33542
Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCA-AACCATTTCATTGCCCATTT 117470
|||| |||||| ||||||| |||| |||| || | ||| | ||||| |
Sbjct 33541 GCAATGAGGCGCGATGCGAAGG-TCGAGTTCTTGTCGCAGATCCAACGAAGGGCCCAGTC 33483
Query 117471 CGCCTTCTTCTCAATACATGGTAC 117494
|||||||||| || || || ||
Sbjct 33482 GGCCTTCTTCTTGATGCACGGGAC 33459
>seq3865
Length=68630
Score = 82.4 bits (90), Expect = 9e-11
Identities = 157/226 (69%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGT-TGATTTTCGCGGGCGATTTCAAAGAG 9430
||||| || ||||| ||||| | ||| || || || | ||| || || || | || ||
Sbjct 2534 GCATCGATTTCATCGATGAAAATAATGCAGGGGGTGCTCTTC-CGCGCTGTTGCGAAAAG 2592
Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAAC 9489
|| || || || || ||| ||||| || ||||||||||| || | | || |||
Sbjct 2593 GTCACGGACTCTAGAGGGGCCGACACCCACGAACATCTCCACGAACTCGGAACCGCTAAC 2652
Query 9490 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549
| || ||| || || | ||||||||| ||| |||| ||||| | |||||||| |
Sbjct 2653 GCT-GAAGAAAGGCACTTGAGATTCACCGGCAGTGGCCTTAGCGAGCAACGTCTTACCGG 2711
Query 9550 TACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595
|||| || ||| | ||| | |||||| || || || ||||| ||
Sbjct 2712 TACCGGGAGGACCTGAGAGAATGGCACCACGCGGGATTTTGGCACC 2757
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589950386489760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |