Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10- 07] 4,124 sequences; 47,007,994 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3624 102 1e-16 seq4009 86.0 7e-12 seq3865 82.4 9e-11 >seq3624 Length=35007 Score = 102 bits (112), Expect = 1e-16 Identities = 299/458 (65%), Gaps = 2/458 (0%) Strand=Plus/Minus Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528 || || || ||||| ||||| ||||| | | |||||||| | ||||| ||| Sbjct 24778 GACGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGACGATTTCGCAGCAC 24719 Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588 | |||||| || ||| || || | ||||| ||||| ||||| |||||| ||| Sbjct 24718 AGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCC 24659 Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-C 106647 ||||| | |||| |||| | || || || ||| | || ||| || || | ||| | | Sbjct 24658 TTGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGATCGCGTACCAGAGC 24599 Query 106648 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 106707 || | | || ||| | || | || |||||| ||| |||| ||||||||| Sbjct 24598 TTCTGAGCACGG-ACAGTCTCGCGACCACGACCCTCCTTCTCATACTGCTCGTAGAGGGC 24540 Query 106708 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 106767 || || |||||||| |||||| ||||| || || || || || | || | Sbjct 24539 CTCGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTAGGGCACATGAGGGT 24480 Query 106768 CCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 106827 ||| || || |||||| ||||||||||| || || |||||||| || | | || Sbjct 24479 CCAGGTGCCGTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCGTAGAA 24420 Query 106828 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCAT 106887 || || | | ||| |||| || | || ||||| || | || || || | Sbjct 24419 AAGGTCACGAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGGTCGAGAAAGCTGAA 24360 Query 106888 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 106925 || ||| || ||||| ||||| || |||| |||| || Sbjct 24359 GACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAG 24322 >seq4009 Length=43835 Score = 86.0 bits (94), Expect = 7e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 |||||||| || || || || ||||| ||||| | || |||||||| || |||||| Sbjct 33661 CCCTCATCGCGAGAGATGAGCTCATTGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTC 33602 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| |||| | | ||| || ||| ||||||||||||||| || ||| || Sbjct 33601 TTGAGCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAGATACCCTCGACGGCCGCGAAA 33542 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCA-AACCATTTCATTGCCCATTT 117470 |||| |||||| ||||||| |||| |||| || | ||| | ||||| | Sbjct 33541 GCAATGAGGCGCGATGCGAAGG-TCGAGTTCTTGTCGCAGATCCAACGAAGGGCCCAGTC 33483 Query 117471 CGCCTTCTTCTCAATACATGGTAC 117494 |||||||||| || || || || Sbjct 33482 GGCCTTCTTCTTGATGCACGGGAC 33459 >seq3865 Length=68630 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGT-TGATTTTCGCGGGCGATTTCAAAGAG 9430 ||||| || ||||| ||||| | ||| || || || | ||| || || || | || || Sbjct 2534 GCATCGATTTCATCGATGAAAATAATGCAGGGGGTGCTCTTC-CGCGCTGTTGCGAAAAG 2592 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAAC 9489 || || || || || ||| ||||| || ||||||||||| || | | || ||| Sbjct 2593 GTCACGGACTCTAGAGGGGCCGACACCCACGAACATCTCCACGAACTCGGAACCGCTAAC 2652 Query 9490 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549 | || ||| || || | ||||||||| ||| |||| ||||| | |||||||| | Sbjct 2653 GCT-GAAGAAAGGCACTTGAGATTCACCGGCAGTGGCCTTAGCGAGCAACGTCTTACCGG 2711 Query 9550 TACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 |||| || ||| | ||| | |||||| || || || ||||| || Sbjct 2712 TACCGGGAGGACCTGAGAGAATGGCACCACGCGGGATTTTGGCACC 2757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589950386489760