Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10-
07] 4,124 sequences; 47,007,994 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq1456 127 5e-24
seq3796 107 4e-18
>seq1456
Length=54918
Score = 127 bits (140), Expect = 5e-24
Identities = 139/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| |||||||| || ||||| || || || ||||| ||| ||||| | ||||| ||
Sbjct 54615 ACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCCTCA 54556
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || || || || ||||||||||| ||||| ||
Sbjct 54555 AGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGG 54496
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || ||||||||||| || || || ||||| | |||||
Sbjct 54495 ATCTTGCTCTTGACGTTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTG 54436
Query 195112 CCTGT 195116
|| ||
Sbjct 54435 CCGGT 54431
Score = 114 bits (126), Expect = 3e-20
Identities = 140/190 (74%), Gaps = 6/190 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| |||||| ||| || || || ||||| |||| ||||| | || || |||
Sbjct 54898 ACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCCTCG 54839
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || ||||| || || || || ||||| || |||||||| || ||||| ||
Sbjct 54838 AGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 54779
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGTC 195108
|| || ||||||||| || |||||||| ||| || || || ||||| | |||
Sbjct 54778 ATCTTGCTCTTGACGTTGTCGATGGTGTCGCTCGA---CTCGACCTCGAGGGTGATGGTC 54722
Query 195109 TTTCCTGTCA 195118
|| || ||||
Sbjct 54721 TTGCCAGTCA 54712
>seq3796
Length=68498
Score = 107 bits (118), Expect = 4e-18
Identities = 94/117 (80%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||||||||| || ||||| || || || ||||| |||| ||||| | ||||| |||
Sbjct 32798 ACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCG 32739
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048
|||||||| || |||||||| || || || ||||| || |||||||| || ||||||
Sbjct 32738 AGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCT 32682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109422976379108
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |