Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10- 07] 4,124 sequences; 47,007,994 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4009 131 3e-25 seq3624 123 5e-23 >seq4009 Length=43835 Score = 131 bits (144), Expect = 3e-25 Identities = 333/510 (65%), Gaps = 7/510 (1%) Strand=Plus/Plus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTG 25873 ||||||||| |||||| |||||| | |||||| | | ||| | | || || | Sbjct 33466 GCATCAAGAAGAAGGCCGACTGGGCCCTTCGTTGGATCTGCGACAAGAACTCGACCTTCG 33525 Query 25874 GCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGG 25933 ||| || | || || || || || ||||| ||||| |||||||| || || || Sbjct 33526 CATCGCGCCTCATTGCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCCT 33585 Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTC 25992 |||| |||||||||||| || || |||||| || || ||||| ||||| |||||| Sbjct 33586 CCATTTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTTTG-ACTTTCTCCAATGAGCTC 33644 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052 ||| | || ||||| | || | || || ||||||||||| | | || ||| | Sbjct 33645 ATCTCTCGCGATGAGGGCATGCATACCGACTTCGCCTGCCTGCTGTTCTCG---CACATC 33701 Query 26053 CTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAG 26112 || || | || |||| | | ||||||| |||||||| ||||||||| Sbjct 33702 AAGTCGAAGCCCAGCCCCGAATCCGTTGAGAAGATCATCACCGAGGCTGTCGAGATCGAG 33761 Query 26113 AAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATG 26172 |||||||| | | ||||||||| | |||||| Sbjct 33762 AAGGAGTTCCTCACGGACGCTCTTCCCGTCGCTCTTCTTGGCATGAACGCGACTCTCATG 33821 Query 26173 AGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACT 26231 |||| ||||| |||| || || |||| ||||| ||| | |||||| | | Sbjct 33822 TGCCAGTACATCGAGTTCGTTGCTGACCGCCTGCTGGTGGC-GCTGGGCAACAAGAAGTA 33880 Query 26232 CTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291 ||||| || | ||||| |||||||| ||||| ||||| ||| | | || ||||| || Sbjct 33881 CTACAACTCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTCAACGGCAAGACGAA 33940 Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||| || ||| | || || ||||| || Sbjct 33941 CTTCTTCGAGAAGCGCGTTGGTGACTACCA 33970 Score = 89.7 bits (98), Expect = 1e-12 Identities = 163/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | || |||||| || || ||||||||||| Sbjct 33073 ATTTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCTGAGGAGATTGATCTT 33132 Query 25537 GCCAAGGACATGGACGGCTGGTAC--GCTC-TATCCAAAGACGAGCAGCATTTTC-TCAA 25592 ||||||| | ||| |||| || || | | | | ||||||| || | ||| || Sbjct 33133 TCCAAGGATCTTCACGACTGGAACAAGCGCCTCAACGATGACGAGC-GCTTCTTCATCTC 33191 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | || ||||| || || ||||| || || ||||||||||| || ||| | Sbjct 33192 CCACGTCCTCGCTTTCTTCGCCGCGTCTGACGGCATCGTGAACGAGAACCTCGTCGAACG 33251 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | || || ||| | |||||| || ||||||||||||||||| Sbjct 33252 CTTCAGCTCCGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGAT 33305 >seq3624 Length=35007 Score = 123 bits (136), Expect = 5e-23 Identities = 668/1043 (64%), Gaps = 45/1043 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 || || |||||||||||||| ||||| ||||| |||| || ||||||||| ||| Sbjct 25060 GTGAGAGCAGCGTGGTAGATAGTCTCGAAGATTTGAATGTTCAGCTGCTTGGCCTCAGGA 25001 Query 221477 GAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 ||| ||| |||||||| || | | ||||| |||| || || || | || || | | Sbjct 25000 GAATCGAACGGCATACGAAG-AGCAAGGAAAG-CGTCAGCAAGACCGTTGACACCAACAG 24943 Query 221535 CGATGGGCCTGTGTCTCCTGTTGGAAGCGGCC--GCTTCTGGCACGGGATAAAAGTTGAC 221592 |||| || | ||| | | ||||| | || |||||||| || || || ||| | Sbjct 24942 CGATAGGACGGTGACGCATGTTGCT--CTTCCTGGCTTCTGGAACTGGGTAGTGGTTAAT 24885 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 ||| || | ||||| || ||| | || | | |||||| ||||||| Sbjct 24884 GTCAATGATCTTGTTCAGATTCTTGACAAGCACCTGAGTAACCTCGTGAAGCTTCT---- 24829 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 |||| | | | | || || | || || || || | | ||| || | Sbjct 24828 --TGAAGTCGTA---GACACCTTCCTCGACA---TCGACGAAGGTGGGTAGCGCCAGAGA 24777 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 || | ||| ||||| || || || || ||| |||| | ||| || || || Sbjct 24776 CGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGACGATTTCGCAGCACAG 24717 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCT 221831 |||| || ||||| || |||| || || || |||||| ||| ||| | |||| Sbjct 24716 GTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGTCCT 24658 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 |||| | ||| ||||| || || || | ||| ||| | || ||| || |||||| | Sbjct 24657 TGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGATCGCGTACCAGAGCT 24598 Query 221892 CTCTG-GCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATAC--CCGGTATAG 221947 |||| || | || ||| || ||| | |||||| ||| |||||| | ||| || Sbjct 24597 -TCTGAGCACGGACAGTC-TCGCGACCACGACCCTC---CTTCTCATACTGCTCGTAGAG 24543 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 || | | || | ||||| || | ||| | || || || ||| | || ||||| Sbjct 24542 GGCCT--CGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTAGGGCACATG 24485 Query 222008 AGACTCCAG-TGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066 || ||||| ||| ||| | | || | || ||||||||| || || ||||| || || Sbjct 24484 AGGGTCCAGGTGCC-GTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGC 24426 Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126 | || || || | | || |||||| |||| ||| || | || || | ||| Sbjct 24425 GTAGAAAAGGTCACGAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGGTCGAGAAA 24366 Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186 || | ||||| ||||||||||| || |||| ||| | ||| ||||| |||||||| Sbjct 24365 GCTGAAGACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAGCACCGGGGCGCTTGTT 24306 Query 222187 GCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245 |||||||| | || | | ||| | |||| | | || || | || | || | Sbjct 24305 ACCACCCTGGT-CAACGTAGCGGGCAGTGTTGTTGTACACACGGAGCATAGGGATGAGGC 24247 Query 222246 CGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCC---TCAGGT-TACTG 222301 ||||| ||||| || || |||||| || ||| | | ||| || Sbjct 24246 CGTTGCTGGTGCCGTTAGTACCGGCAATGTAGCTGCCAGTGGCACGGATGCGGTGAACGT 24187 Query 222302 GCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361 |||| ||||||||||||||| || ||||||||||| ||| |||| || ||||| Sbjct 24186 TCAGA----CCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTCAGGGTGTCG 24131 Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT 222421 ||| ||||| || |||||||| | || | || || ||||| | || ||||| Sbjct 24130 TAGATACCCTCAATGCTATCCTCCTTCATGTCGATGAGGAAGCAAGAAGCCAACTGAGGC 24071 Query 222422 TTGGTGGAACAGGCGTTAAACAG 222444 |||| | || || || ||||| Sbjct 24070 TTGGGAGTACCAGCATTGAACAG 24048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928796918050560