Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10-
07] 4,124 sequences; 47,007,994 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq3613 187 3e-41
seq4009 172 7e-37
seq3889 147 3e-29
seq3869 116 5e-20
seq625 116 5e-20
seq2286 114 2e-19
seq3624 102 1e-15
>seq3613
Length=115495
Score = 187 bits (206), Expect = 3e-41
Identities = 344/498 (69%), Gaps = 10/498 (2%)
Strand=Plus/Plus
Query 1852159 CGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 1852218
||| | ||| || ||||| ||||| || ||||||||||| | || || || ||||
Sbjct 94592 CGCTAGGGCGAAGATCTTCCGCTGATCCACGCCGCCAAACTGCACATCCACATCCAGGTA 94651
Query 1852219 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTG-CGGT 1852277
|||||||||||||||||||||||| ||||||| || | | ||| ||||| ||| | ||
Sbjct 94652 CTGCTCGTCGAGGGCCTGCATGAGAGGGTAGATCAGGCCGGACAGTAGCGGATTGTCCGT 94711
Query 1852278 CCATCTTGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGC-CGGTGCGCACG-TGCGCC 1852333
| |||||| |||| || | ||| | | ||| ||||| ||||| || | ||| |
Sbjct 94712 CTG-CTTGACGACCTCGGCACCCGCCCTCTTCGCGTCGTGCTCGGTGGTCATGGTGCTC- 94769
Query 1852334 GCGAGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACA 1852393
|| || | ||||| | | |||| | | |||||||||| |||| ||||
Sbjct 94770 ---AGGCGCAACAGGTCCATCATGTAGTCCGGGGACTTCTGGTACTCGCTGCCCAGCACG 94826
Query 1852394 AACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCG 1852453
||||| || | | | | || |||||||| | || |||| | ||||| | ||| |
Sbjct 94827 AACTCCAGACGGTCGACCGACACGCCGACGGCCTTGAGCGACTCGGTGATGACGTACTTG 94886
Query 1852454 TACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCG 1852513
|| | | |||| | ||| || || |||| ||| |||||||||| ||||
Sbjct 94887 TAATACTTGGCGCGGTAATTGACGAGCTCGATGGGCGCCTTCAGGTTGTCGAGGAAGGCG 94946
Query 1852514 TGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTG 1852573
|| | ||||| | ||||||||||| ||||||||||||| || || | || | |||
Sbjct 94947 TGAATATCGGCCAGCAGGATCTTGACGTGACAGCCGGCCTGCAGGAACTGCGCGATCTTG 95006
Query 1852574 AAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATG 1852633
| || ||||| |||||||| |||||| |||| |||| ||| || ||||| || ||
Sbjct 95007 AGCATCGGCACGAAGTAGCCGCAGTGCGGCCTGCCGGTCGTCGCGGTACCCCAGTAGATC 95066
Query 1852634 ATCAGGGGGCGCTCGGCC 1852651
| || || |||||| ||
Sbjct 95067 TTGAGCGGACGCTCGCCC 95084
>seq4009
Length=43835
Score = 172 bits (190), Expect = 7e-37
Identities = 185/245 (76%), Gaps = 0/245 (0%)
Strand=Plus/Minus
Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749
|||||| ||| || || |||||| |||||| ||||| |||||||| | |||||||||
Sbjct 33977 CGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTTGAGCGAGAT 33918
Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809
|||||| | ||| ||||||| || ||||||| ||| | | || |||| | |
Sbjct 33917 GTTCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCCCAGCGCCAC 33858
Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869
||||||||||| || || ||||||||||||||||||||||| ||||||||||| |
Sbjct 33857 CAGCAGGCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGTCGCGTTCATGCCAAG 33798
Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929
|| || || || || | || | | ||||| |||||||||||||| |||||| |||
Sbjct 33797 AAGAGCGACGGGAAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAGCCTCGGTGAT 33738
Query 868930 GATCT 868934
|||||
Sbjct 33737 GATCT 33733
Score = 109 bits (120), Expect = 7e-18
Identities = 175/251 (70%), Gaps = 3/251 (1%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|| ||||||||||| || |||||||| ||||| ||| | |||| | | |||
Sbjct 33326 GAATGGATGTTCTCCATCATAATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATCTGG 33267
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
||||| |||| || || | ||||||||| |||||||||||| ||||||||
Sbjct 33266 ACCTCGGAGCTGAAGCGTTCGACGAGGTTCTCGTTCACGATGCCGTCAGACGCGGCGAAG 33207
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809
||||| |||||||| ||| ||| ||||||||| ||| ||| || ||||| |
Sbjct 33206 AAAGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGGCGCTTGTTCCAGTCG 33147
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
|| | || || | |||||| || ||||||| || ||||||||||| |||
Sbjct 33146 TGAAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCAGAAAGAAGCCTCGGCCTTCTTG 33087
Query 869870 TACATCTCCCA 869880
||||||| |||
Sbjct 33086 TACATCTGCCA 33076
Score = 87.8 bits (96), Expect = 2e-11
Identities = 114/156 (73%), Gaps = 9/156 (6%)
Strand=Plus/Minus
Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278
|| ||||||||||| |||||||||||||| || |||| | |||| ||| ||| |||
Sbjct 33622 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAG 33563
Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338
|| ||||||||||| || || | ||||| ||| || ||| |||||| | ||||
Sbjct 33562 ATACCCTCGACGGCCGCGAAAGCAATGAGGCGCGATGCGAAG--GTCGAG----TTCTTG 33509
Query 869339 T---TGATCCACTTCATCGCCCAGTCGGCCTTTTTC 869371
| |||||| | |||||||||||||| |||
Sbjct 33508 TCGCAGATCCAACGAAGGGCCCAGTCGGCCTTCTTC 33473
>seq3889
Length=187845
Score = 147 bits (162), Expect = 3e-29
Identities = 99/111 (89%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|||||||||||||||||||| ||| | || |||||| |||| |||||| |||||||||||
Sbjct 17203 GCCGCCAACTACCTCGACATTAAGGCACTTCTCGATGTTGGCTGCAAGACTGTGGCCAAC 17262
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296
||||||||||||||||| ||||| |||||||||||||| || |||||| ||
Sbjct 17263 ATGATCAAGGGCAAGTCTCCCGACGAGATCCGCAAGACTTTCAACATCCAG 17313
>seq3869
Length=188552
Score = 116 bits (128), Expect = 5e-20
Identities = 254/370 (69%), Gaps = 9/370 (2%)
Strand=Plus/Plus
Query 1726674 ATAGAAAGGTATGCGGCTGGGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTC 1726732
|||| ||| ||||| || | |||||| | |||||||| || || || | | |
Sbjct 28369 ATAGGAAGTGGTGCGGGTGCTGGACGGCGCCGATGGCGTCGA-TGGCGACGTCGAAGGAG 28427
Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGC 1726792
|||||||||||||| |||||||||| || | | ||| | || |||| ||||||||||
Sbjct 28428 CCGTCGGTGCCGTTTTTGAAGCCGACGGGGAAGGACAGGCCGGAGGCCAGCTCGCGGTGC 28487
Query 1726793 ACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCAAATA- 1726851
| |||||||||||| ||||||||||| | |||||| | | |||||| || | ||
Sbjct 28488 AGCTGGCTCTCGGTGGTGCGCGCGCCAATGGCGCCGACGGTGATCAGGTCGGCGAGGTAC 28547
Query 1726852 AGGGGCCACCAGAGGACTGAGAAACTCGACGGCCACGGGCTGATCGACGGCG-ACGACGA 1726910
| ||| | | | | || | |||| ||| | |||| || | | ||| || | |
Sbjct 28548 TGCGGCGAGATGGTGTC-CAGCATCTCGCTGGCGATGGGC--AT-GCCAGCGTTCGTC-A 28602
Query 1726911 GATCGCGCAACAGGCGGCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGA 1726970
| ||| |||| | |||||| | || || | | | | | || |||||
Sbjct 28603 GGTCGACGAACATCTGCCGCGACACGCGGAGCCCTTTGTTGATCTTGAAGGAGTTGTCGA 28662
Query 1726971 GGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGG 1727030
|||||||||| || ||||||||||| |||||||| || | ||||| |||| |||||
Sbjct 28663 TGTCGGGGTCGTTGATGAGGCCCTTCCAGCCGACGGTTGTTCTGGGCTTCTCGAGATAGG 28722
Query 1727031 CGCGCATGAC 1727040
||||||| ||
Sbjct 28723 CGCGCATCAC 28732
Score = 100 bits (110), Expect = 3e-15
Identities = 109/144 (76%), Gaps = 8/144 (6%)
Strand=Plus/Plus
Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTC----GCAACGTGCCGGCAGGCCTC 19100
|||||||||| |||||||| ||| || |||||| | ||||| || | |||||
Sbjct 32272 AGGACAGCATTGGCGGCACTGTG----GCTTGTGTCATCAGAAACGTCCCCACTGGCCTG 32327
Query 19101 GGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCG 19160
|| |||||||||||||||||| | || || ||| ||||| ||||||||| || ||
Sbjct 32328 GGTGAGCCGTGCTTTGACAAGCTTGAAGCGAAGCTTGCCCATGCCATGCTGAGCATACCT 32387
Query 19161 GCCACCAAGGGATTCGAGATTGGC 19184
|| ||||| || || |||||||||
Sbjct 32388 GCGACCAAAGGGTTTGAGATTGGC 32411
Score = 91.5 bits (100), Expect = 2e-12
Identities = 202/299 (68%), Gaps = 8/299 (3%)
Strand=Plus/Plus
Query 18120 CGTCGGCTGC-ATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCC 18178
|||||| ||| ||| ||||||| || ||| || | | || ||||| | || || |
Sbjct 31591 CGTCGG-TGCTATCGTCGACGGTTGTCCTCCGGGCCTACGCCTCACCGAGACGGATATTC 31649
Query 18179 AGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGC 18238
|||| || || || ||||| || || || |||| | ||||||| ||||| |||
Sbjct 31650 AGCCGCAACTGACACGACGCCGCCCCGGTCAAAGCGCCATCACCACGCCACGCAATGAGA 31709
Query 18239 CCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCG 18298
|| |||||| |||||||||||||||||| |||| |||| || ||| | || |||
Sbjct 31710 AAGACCGCGTCGAAATCCAGTCGGGCACGGAGTTCGGCGTCACTCTGGGCACCCCTATCG 31769
Query 18299 GCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGG--- 18355
|||| |||| || ||||||| |||| |||||| | ||| | | ||
Sbjct 31770 GCCTGCGTGTGATGAATGAGAACCAGCGCCCCGGAGACTATGGCAACAAGACGATGGATC 31829
Query 18356 TG---CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCG 18411
|| || |||| ||||| || | || ||| ||| || |||||| ||||||||
Sbjct 31830 TGTATCCCAGGCCTAGCCACGCTGATTGGACGTACCTGGAGAAATACGGCGTCAAGGCG 31888
>seq625
Length=73589
Score = 116 bits (128), Expect = 5e-20
Identities = 141/190 (74%), Gaps = 3/190 (2%)
Strand=Plus/Plus
Query 1726965 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 1727024
|||| | ||| |||||| || |||||||||||| |||||||| ||||| ||||| ||||
Sbjct 48273 CGTCAATGTCCGGGTCGTTGATCAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGA 48332
Query 1727025 CATAGGCGCGCATGACCACGCAAAGCGCGTCGCCGACCTCGTCTCGGACAAAGGCGCGCA 1727084
||||||||||||| | ||| ||| || ||| | || | |||| | | ||| ||
Sbjct 48333 GGTAGGCGCGCATGATGATGCACAGCTCGCCGCTCAGCT--TATCGG-CCAGGGCCTTCA 48389
Query 1727085 GGCGTCGGCCATAGTCGACGACGGCCGCCGGGTCGTGCGCCGAACACGGACCAACGATAA 1727144
|||| || | || |||||| ||| |||||||||| ||| || || || || || |
Sbjct 48390 GGCGCTGGGCGTACTCGACGGCGGTTTCCGGGTCGTGGATCGAGCAGGGGCCGACCATGA 48449
Query 1727145 CCAGCAGCCG 1727154
||||||| ||
Sbjct 48450 CCAGCAGACG 48459
>seq2286
Length=46180
Score = 114 bits (126), Expect = 2e-19
Identities = 150/208 (72%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 18093 CACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTG 18152
|| || ||||||||| ||| | ||| || ||||| |||||||| || ||| |
Sbjct 12341 CAGCTATGGCGAGTCACACTGCCTCTCCGTTGGTTGCATTGTCGACGGCTGCCCTCCGGG 12400
Query 18153 CATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGG 18212
||||| || | ||||||||||||||||| ||| || || || || ||||||||| |
Sbjct 12401 CATGCAGCTCACTGAGGCCGACATCCAGCCCCAGATGACCCGCCGTCGGCCGGGCCAGAG 12460
Query 18213 CGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAA 18272
|||| | |||| || ||||||||| ||||| || ||||| || ||||| |||
Sbjct 12461 CGCAATCACCACACCTCGCAACGAGAAGGATCGTGTGGAAATCCAATCCGGCACCGAGTT 12520
Query 18273 CGGCCTCACGCTCGGCTCGCCCGTCGGC 18300
||| ||||||| || ||||| | |||
Sbjct 12521 TGGCGTCACGCTGGGAACGCCCATTGGC 12548
Score = 104 bits (114), Expect = 3e-16
Identities = 119/159 (75%), Gaps = 1/159 (1%)
Strand=Plus/Plus
Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103
|| || ||||| || ||||| |||| || ||| || || ||||| | || |||||
Sbjct 13021 GAAGATAGCATTGGGGGCACTGTGAGCTGTGTGATCCGTAATGTGCCATCTGGTCTCGGT 13080
Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163
||||| ||||| |||||| | ||||| ||| || || |||||||| |||||||||
Sbjct 13081 GAGCCTTGCTTCGACAAGCTTGAGGCAATGCTTGCGCATGCCATGCTCAGTATCCCGGCC 13140
Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTT-GCGGGTGC 19201
|| ||||| |||||||||||| || ||| |||| |||
Sbjct 13141 ACGAAGGGCTTCGAGATTGGCTCAGGTTTTGGCGGTTGC 13179
>seq3624
Length=35007
Score = 102 bits (112), Expect = 1e-15
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| |||||||| || |||| ||| | || |||||||| || | ||||||||||
Sbjct 24299 CTGGTCAACGTAGCGGGCAGTGTTGTTGTACACACGGAGCATAGGGATGAGGCCGTTGCT 24240
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||| || || || | |||| ||| | ||| || | ||| || | ||
Sbjct 24239 GGTGCCGTTAGTACCGGCAATGTAGCTGCCAGTGGCACGGATGCGGTGAACGTTCAGACC 24180
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| || ||||| | ||||||||| | || || || || ||||||||||| |||||
Sbjct 24179 GATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTCAGGGTGTCGTAGATACCCTC 24120
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGA 1630280
|| || |||||||||| | ||| ||||| ||
Sbjct 24119 AATGCTATCCTCCTTCATGTCGATGAGGAAGCAAGA 24084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106800765247308
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