Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10- 07] 4,124 sequences; 47,007,994 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3613 187 3e-41 seq4009 172 7e-37 seq3889 147 3e-29 seq3869 116 5e-20 seq625 116 5e-20 seq2286 114 2e-19 seq3624 102 1e-15 >seq3613 Length=115495 Score = 187 bits (206), Expect = 3e-41 Identities = 344/498 (69%), Gaps = 10/498 (2%) Strand=Plus/Plus Query 1852159 CGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 1852218 ||| | ||| || ||||| ||||| || ||||||||||| | || || || |||| Sbjct 94592 CGCTAGGGCGAAGATCTTCCGCTGATCCACGCCGCCAAACTGCACATCCACATCCAGGTA 94651 Query 1852219 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTG-CGGT 1852277 |||||||||||||||||||||||| ||||||| || | | ||| ||||| ||| | || Sbjct 94652 CTGCTCGTCGAGGGCCTGCATGAGAGGGTAGATCAGGCCGGACAGTAGCGGATTGTCCGT 94711 Query 1852278 CCATCTTGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGC-CGGTGCGCACG-TGCGCC 1852333 | |||||| |||| || | ||| | | ||| ||||| ||||| || | ||| | Sbjct 94712 CTG-CTTGACGACCTCGGCACCCGCCCTCTTCGCGTCGTGCTCGGTGGTCATGGTGCTC- 94769 Query 1852334 GCGAGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACA 1852393 || || | ||||| | | |||| | | |||||||||| |||| |||| Sbjct 94770 ---AGGCGCAACAGGTCCATCATGTAGTCCGGGGACTTCTGGTACTCGCTGCCCAGCACG 94826 Query 1852394 AACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCG 1852453 ||||| || | | | | || |||||||| | || |||| | ||||| | ||| | Sbjct 94827 AACTCCAGACGGTCGACCGACACGCCGACGGCCTTGAGCGACTCGGTGATGACGTACTTG 94886 Query 1852454 TACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCG 1852513 || | | |||| | ||| || || |||| ||| |||||||||| |||| Sbjct 94887 TAATACTTGGCGCGGTAATTGACGAGCTCGATGGGCGCCTTCAGGTTGTCGAGGAAGGCG 94946 Query 1852514 TGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTG 1852573 || | ||||| | ||||||||||| ||||||||||||| || || | || | ||| Sbjct 94947 TGAATATCGGCCAGCAGGATCTTGACGTGACAGCCGGCCTGCAGGAACTGCGCGATCTTG 95006 Query 1852574 AAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATG 1852633 | || ||||| |||||||| |||||| |||| |||| ||| || ||||| || || Sbjct 95007 AGCATCGGCACGAAGTAGCCGCAGTGCGGCCTGCCGGTCGTCGCGGTACCCCAGTAGATC 95066 Query 1852634 ATCAGGGGGCGCTCGGCC 1852651 | || || |||||| || Sbjct 95067 TTGAGCGGACGCTCGCCC 95084 >seq4009 Length=43835 Score = 172 bits (190), Expect = 7e-37 Identities = 185/245 (76%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||| ||| || || |||||| |||||| ||||| |||||||| | ||||||||| Sbjct 33977 CGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTTGAGCGAGAT 33918 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 |||||| | ||| ||||||| || ||||||| ||| | | || |||| | | Sbjct 33917 GTTCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCCCAGCGCCAC 33858 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 ||||||||||| || || ||||||||||||||||||||||| ||||||||||| | Sbjct 33857 CAGCAGGCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGTCGCGTTCATGCCAAG 33798 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 || || || || || | || | | ||||| |||||||||||||| |||||| ||| Sbjct 33797 AAGAGCGACGGGAAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAGCCTCGGTGAT 33738 Query 868930 GATCT 868934 ||||| Sbjct 33737 GATCT 33733 Score = 109 bits (120), Expect = 7e-18 Identities = 175/251 (70%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||||||||| || |||||||| ||||| ||| | |||| | | ||| Sbjct 33326 GAATGGATGTTCTCCATCATAATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATCTGG 33267 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||| || || | ||||||||| |||||||||||| |||||||| Sbjct 33266 ACCTCGGAGCTGAAGCGTTCGACGAGGTTCTCGTTCACGATGCCGTCAGACGCGGCGAAG 33207 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809 ||||| |||||||| ||| ||| ||||||||| ||| ||| || ||||| | Sbjct 33206 AAAGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGGCGCTTGTTCCAGTCG 33147 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 || | || || | |||||| || ||||||| || ||||||||||| ||| Sbjct 33146 TGAAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCAGAAAGAAGCCTCGGCCTTCTTG 33087 Query 869870 TACATCTCCCA 869880 ||||||| ||| Sbjct 33086 TACATCTGCCA 33076 Score = 87.8 bits (96), Expect = 2e-11 Identities = 114/156 (73%), Gaps = 9/156 (6%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || ||||||||||| |||||||||||||| || |||| | |||| ||| ||| ||| Sbjct 33622 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAG 33563 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||||||||| || || | ||||| ||| || ||| |||||| | |||| Sbjct 33562 ATACCCTCGACGGCCGCGAAAGCAATGAGGCGCGATGCGAAG--GTCGAG----TTCTTG 33509 Query 869339 T---TGATCCACTTCATCGCCCAGTCGGCCTTTTTC 869371 | |||||| | |||||||||||||| ||| Sbjct 33508 TCGCAGATCCAACGAAGGGCCCAGTCGGCCTTCTTC 33473 >seq3889 Length=187845 Score = 147 bits (162), Expect = 3e-29 Identities = 99/111 (89%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 |||||||||||||||||||| ||| | || |||||| |||| |||||| ||||||||||| Sbjct 17203 GCCGCCAACTACCTCGACATTAAGGCACTTCTCGATGTTGGCTGCAAGACTGTGGCCAAC 17262 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||||||||| ||||| |||||||||||||| || |||||| || Sbjct 17263 ATGATCAAGGGCAAGTCTCCCGACGAGATCCGCAAGACTTTCAACATCCAG 17313 >seq3869 Length=188552 Score = 116 bits (128), Expect = 5e-20 Identities = 254/370 (69%), Gaps = 9/370 (2%) Strand=Plus/Plus Query 1726674 ATAGAAAGGTATGCGGCTGGGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTC 1726732 |||| ||| ||||| || | |||||| | |||||||| || || || | | | Sbjct 28369 ATAGGAAGTGGTGCGGGTGCTGGACGGCGCCGATGGCGTCGA-TGGCGACGTCGAAGGAG 28427 Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGC 1726792 |||||||||||||| |||||||||| || | | ||| | || |||| |||||||||| Sbjct 28428 CCGTCGGTGCCGTTTTTGAAGCCGACGGGGAAGGACAGGCCGGAGGCCAGCTCGCGGTGC 28487 Query 1726793 ACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCAAATA- 1726851 | |||||||||||| ||||||||||| | |||||| | | |||||| || | || Sbjct 28488 AGCTGGCTCTCGGTGGTGCGCGCGCCAATGGCGCCGACGGTGATCAGGTCGGCGAGGTAC 28547 Query 1726852 AGGGGCCACCAGAGGACTGAGAAACTCGACGGCCACGGGCTGATCGACGGCG-ACGACGA 1726910 | ||| | | | | || | |||| ||| | |||| || | | ||| || | | Sbjct 28548 TGCGGCGAGATGGTGTC-CAGCATCTCGCTGGCGATGGGC--AT-GCCAGCGTTCGTC-A 28602 Query 1726911 GATCGCGCAACAGGCGGCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGA 1726970 | ||| |||| | |||||| | || || | | | | | || ||||| Sbjct 28603 GGTCGACGAACATCTGCCGCGACACGCGGAGCCCTTTGTTGATCTTGAAGGAGTTGTCGA 28662 Query 1726971 GGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGG 1727030 |||||||||| || ||||||||||| |||||||| || | ||||| |||| ||||| Sbjct 28663 TGTCGGGGTCGTTGATGAGGCCCTTCCAGCCGACGGTTGTTCTGGGCTTCTCGAGATAGG 28722 Query 1727031 CGCGCATGAC 1727040 ||||||| || Sbjct 28723 CGCGCATCAC 28732 Score = 100 bits (110), Expect = 3e-15 Identities = 109/144 (76%), Gaps = 8/144 (6%) Strand=Plus/Plus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTC----GCAACGTGCCGGCAGGCCTC 19100 |||||||||| |||||||| ||| || |||||| | ||||| || | ||||| Sbjct 32272 AGGACAGCATTGGCGGCACTGTG----GCTTGTGTCATCAGAAACGTCCCCACTGGCCTG 32327 Query 19101 GGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCG 19160 || |||||||||||||||||| | || || ||| ||||| ||||||||| || || Sbjct 32328 GGTGAGCCGTGCTTTGACAAGCTTGAAGCGAAGCTTGCCCATGCCATGCTGAGCATACCT 32387 Query 19161 GCCACCAAGGGATTCGAGATTGGC 19184 || ||||| || || ||||||||| Sbjct 32388 GCGACCAAAGGGTTTGAGATTGGC 32411 Score = 91.5 bits (100), Expect = 2e-12 Identities = 202/299 (68%), Gaps = 8/299 (3%) Strand=Plus/Plus Query 18120 CGTCGGCTGC-ATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCC 18178 |||||| ||| ||| ||||||| || ||| || | | || ||||| | || || | Sbjct 31591 CGTCGG-TGCTATCGTCGACGGTTGTCCTCCGGGCCTACGCCTCACCGAGACGGATATTC 31649 Query 18179 AGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGC 18238 |||| || || || ||||| || || || |||| | ||||||| ||||| ||| Sbjct 31650 AGCCGCAACTGACACGACGCCGCCCCGGTCAAAGCGCCATCACCACGCCACGCAATGAGA 31709 Query 18239 CCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCG 18298 || |||||| |||||||||||||||||| |||| |||| || ||| | || ||| Sbjct 31710 AAGACCGCGTCGAAATCCAGTCGGGCACGGAGTTCGGCGTCACTCTGGGCACCCCTATCG 31769 Query 18299 GCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGG--- 18355 |||| |||| || ||||||| |||| |||||| | ||| | | || Sbjct 31770 GCCTGCGTGTGATGAATGAGAACCAGCGCCCCGGAGACTATGGCAACAAGACGATGGATC 31829 Query 18356 TG---CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCG 18411 || || |||| ||||| || | || ||| ||| || |||||| |||||||| Sbjct 31830 TGTATCCCAGGCCTAGCCACGCTGATTGGACGTACCTGGAGAAATACGGCGTCAAGGCG 31888 >seq625 Length=73589 Score = 116 bits (128), Expect = 5e-20 Identities = 141/190 (74%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 1726965 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 1727024 |||| | ||| |||||| || |||||||||||| |||||||| ||||| ||||| |||| Sbjct 48273 CGTCAATGTCCGGGTCGTTGATCAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGA 48332 Query 1727025 CATAGGCGCGCATGACCACGCAAAGCGCGTCGCCGACCTCGTCTCGGACAAAGGCGCGCA 1727084 ||||||||||||| | ||| ||| || ||| | || | |||| | | ||| || Sbjct 48333 GGTAGGCGCGCATGATGATGCACAGCTCGCCGCTCAGCT--TATCGG-CCAGGGCCTTCA 48389 Query 1727085 GGCGTCGGCCATAGTCGACGACGGCCGCCGGGTCGTGCGCCGAACACGGACCAACGATAA 1727144 |||| || | || |||||| ||| |||||||||| ||| || || || || || | Sbjct 48390 GGCGCTGGGCGTACTCGACGGCGGTTTCCGGGTCGTGGATCGAGCAGGGGCCGACCATGA 48449 Query 1727145 CCAGCAGCCG 1727154 ||||||| || Sbjct 48450 CCAGCAGACG 48459 >seq2286 Length=46180 Score = 114 bits (126), Expect = 2e-19 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 18093 CACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTG 18152 || || ||||||||| ||| | ||| || ||||| |||||||| || ||| | Sbjct 12341 CAGCTATGGCGAGTCACACTGCCTCTCCGTTGGTTGCATTGTCGACGGCTGCCCTCCGGG 12400 Query 18153 CATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGG 18212 ||||| || | ||||||||||||||||| ||| || || || || ||||||||| | Sbjct 12401 CATGCAGCTCACTGAGGCCGACATCCAGCCCCAGATGACCCGCCGTCGGCCGGGCCAGAG 12460 Query 18213 CGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAA 18272 |||| | |||| || ||||||||| ||||| || ||||| || ||||| ||| Sbjct 12461 CGCAATCACCACACCTCGCAACGAGAAGGATCGTGTGGAAATCCAATCCGGCACCGAGTT 12520 Query 18273 CGGCCTCACGCTCGGCTCGCCCGTCGGC 18300 ||| ||||||| || ||||| | ||| Sbjct 12521 TGGCGTCACGCTGGGAACGCCCATTGGC 12548 Score = 104 bits (114), Expect = 3e-16 Identities = 119/159 (75%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103 || || ||||| || ||||| |||| || ||| || || ||||| | || ||||| Sbjct 13021 GAAGATAGCATTGGGGGCACTGTGAGCTGTGTGATCCGTAATGTGCCATCTGGTCTCGGT 13080 Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 ||||| ||||| |||||| | ||||| ||| || || |||||||| ||||||||| Sbjct 13081 GAGCCTTGCTTCGACAAGCTTGAGGCAATGCTTGCGCATGCCATGCTCAGTATCCCGGCC 13140 Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTT-GCGGGTGC 19201 || ||||| |||||||||||| || ||| |||| ||| Sbjct 13141 ACGAAGGGCTTCGAGATTGGCTCAGGTTTTGGCGGTTGC 13179 >seq3624 Length=35007 Score = 102 bits (112), Expect = 1e-15 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| |||||||| || |||| ||| | || |||||||| || | |||||||||| Sbjct 24299 CTGGTCAACGTAGCGGGCAGTGTTGTTGTACACACGGAGCATAGGGATGAGGCCGTTGCT 24240 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||| || || || | |||| ||| | ||| || | ||| || | || Sbjct 24239 GGTGCCGTTAGTACCGGCAATGTAGCTGCCAGTGGCACGGATGCGGTGAACGTTCAGACC 24180 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || ||||| | ||||||||| | || || || || ||||||||||| ||||| Sbjct 24179 GATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTCAGGGTGTCGTAGATACCCTC 24120 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGA 1630280 || || |||||||||| | ||| ||||| || Sbjct 24119 AATGCTATCCTCCTTCATGTCGATGAGGAAGCAAGA 24084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106800765247308