Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10-
07] 4,124 sequences; 47,007,994 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq3613 199 6e-45
seq4009 185 1e-40
seq3889 129 9e-24
seq3869 114 2e-19
seq625 87.8 3e-11
>seq3613
Length=115495
Score = 199 bits (220), Expect = 6e-45
Identities = 349/498 (70%), Gaps = 10/498 (2%)
Strand=Plus/Plus
Query 2411502 CGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 2411561
||| | ||| |||||||| ||||| || ||||||||||| | || || || ||||
Sbjct 94592 CGCTAGGGCGAAGATCTTCCGCTGATCCACGCCGCCAAACTGCACATCCACATCCAGGTA 94651
Query 2411562 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTG-CGGT 2411620
|||||||||||||||||||||||| ||||||| ||| | || |||| ||| | ||
Sbjct 94652 CTGCTCGTCGAGGGCCTGCATGAGAGGGTAGATCAGGCCGGACAGTAGCGGATTGTCCGT 94711
Query 2411621 CCATCTTGACCACCTGGGCGGCGGCC--TTTTGCGCCGTGC-CGACGGTCACGCGCGCCG 2411677
| |||||| |||| ||| | ||| || ||| ||||| || ||||| | | ||
Sbjct 94712 -CTGCTTGACGACCTCGGCACCCGCCCTCTTCGCGTCGTGCTCGGTGGTCATG-GTGC-- 94767
Query 2411678 TCAGGCGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAA 2411737
|||||||||| ||||| | | ||||| | | | | |||||| |||||||| |||| |
Sbjct 94768 TCAGGCGCAACAGGTCCATCATGTAGTCCGGGGACTTCTGGTACTCGCTGCCCAGCACGA 94827
Query 2411738 ATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGT 2411797
| || ||||| || | || ||||| | | || |||| | ||||| | ||| ||
Sbjct 94828 ACTCCAGACGGTCGACCGACACGCCGACGGCCTTGAGCGACTCGGTGATGACGTACTTGT 94887
Query 2411798 ACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGT 2411857
| | | |||| | |||||| || |||| ||| ||||||||| |||||
Sbjct 94888 AATACTTGGCGCGGTAATTGACGAGCTCGATGGGCGCCTTCAGGTTGTCGAGGAAGGCGT 94947
Query 2411858 GCACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAA 2411917
| | ||||| | |||||| | || |||| |||||||| || || | || | || |
Sbjct 94948 GAATATCGGCCAGCAGGATCTTGACGTGACAGCCGGCCTGCAGGAACTGCGCGATCTTGA 95007
Query 2411918 AGATGGGCACAAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAATG 2411976
|| ||||| |||||||| ||| || ||| |||| |||| |||||| ||||| || ||
Sbjct 95008 GCATCGGCACGAAGTAGCCGCAG-TGCGGCCTGCCGGTCGTCGCGGTACCCCAGTAGATC 95066
Query 2411977 CAGAGAGGGCGCTCGGCC 2411994
||| || |||||| ||
Sbjct 95067 TTGAGCGGACGCTCGCCC 95084
>seq4009
Length=43835
Score = 185 bits (204), Expect = 1e-40
Identities = 192/252 (76%), Gaps = 0/252 (0%)
Strand=Plus/Minus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| |||||||| || || || |||||| |||||| ||||| |||||||| | ||
Sbjct 33984 TGACACCCGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTTGA 33925
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
||||||| |||||| | ||| ||||||| || ||||| ||||| | || |
Sbjct 33924 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCCCA 33865
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
||| | | ||||||||||| || ||||| || ||||||||||||||||| | |||||||
Sbjct 33864 GCGCCACCAGCAGGCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGTCGCGTTCA 33805
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||| | || || ||||| || | || ||| ||||| |||||||||||||| ||||
Sbjct 33804 TGCCAAGAAGAGCGACGGGAAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAGCCT 33745
Query 794131 CGATGATGATCT 794142
|| |||||||||
Sbjct 33744 CGGTGATGATCT 33733
>seq3889
Length=187845
Score = 129 bits (142), Expect = 9e-24
Identities = 95/111 (86%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
|||||||||||||||||||| ||| | || |||||| | || |||||||| |||||||||
Sbjct 17203 GCCGCCAACTACCTCGACATTAAGGCACTTCTCGATGTTGGCTGCAAGACTGTGGCCAAC 17262
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAG 2035757
| |||||||||||||| ||||| || ||||||||||| || |||||| ||
Sbjct 17263 ATGATCAAGGGCAAGTCTCCCGACGAGATCCGCAAGACTTTCAACATCCAG 17313
>seq3869
Length=188552
Score = 114 bits (126), Expect = 2e-19
Identities = 212/309 (69%), Gaps = 3/309 (1%)
Strand=Plus/Plus
Query 2175077 GCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTG 2175136
|||||||||||||||||| || ||||| || || | ||| | || |||| ||||||||
Sbjct 28427 GCCGTCGGTGCCGTTTTTGAAGCCGACGGGGAAGGACAGGCCGGAGGCCAGCTCGCGGTG 28486
Query 2175137 CACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCACGCCACGAGGTCTGCCAAATA 2175196
|| |||||||||||||||||||||||| | |||||| | | ||||| || | ||
Sbjct 28487 CAGCTGGCTCTCGGTGGTGCGCGCGCCAATGGCGCCGACGGTGATCAGGTCGGCGAGGTA 28546
Query 2175197 GGGCGCCACCAAAGGGCTGAGAAACTCGACAGCCACGGGCTGGCCGACGTCGACGACCAG 2175256
||| | | | | || | |||| || | |||| ||| ||| || |||
Sbjct 28547 CTGCGGCGAGATGGTGTCCAGCATCTCGCTGGCGATGGGCATGCCAGCGT--TCG-TCAG 28603
Query 2175257 GTCGCGCAGCAGTCGACGCGATGTGGCGAGGCCGGCGGCCAGGCGGCACGACCCGTCGAG 2175316
|||| | || | ||||| | ||| || | | | | || |||||
Sbjct 28604 GTCGACGAACATCTGCCGCGACACGCGGAGCCCTTTGTTGATCTTGAAGGAGTTGTCGAT 28663
Query 2175317 GTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGC 2175376
|||||||||| || ||||||||||| |||||||| || | ||||| |||| ||||||
Sbjct 28664 GTCGGGGTCGTTGATGAGGCCCTTCCAGCCGACGGTTGTTCTGGGCTTCTCGAGATAGGC 28723
Query 2175377 GCGCATGAC 2175385
|||||| ||
Sbjct 28724 GCGCATCAC 28732
>seq625
Length=73589
Score = 87.8 bits (96), Expect = 3e-11
Identities = 137/192 (71%), Gaps = 7/192 (4%)
Strand=Plus/Plus
Query 2175310 CGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGA 2175369
|||| | ||| |||||| || |||||||||||| |||||||| ||||| ||||| ||||
Sbjct 48273 CGTCAATGTCCGGGTCGTTGATCAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGA 48332
Query 2175370 CATAGGCGCGCATGACCACCAGGAGAGCGTCGCCGACCTCTG--TCTCGGCAAAGGTGCG 2175427
||||||||||||| | | | ||| |||||| ||| | | ||||| | ||
Sbjct 48333 GGTAGGCGCGCATGATGA--TGCACAGC-TCGCCG--CTCAGCTTATCGGCCAGGGCCTT 48387
Query 2175428 CAGCCGTCGGCCATACTCGACGATGGCCTGGGGATCGTGCGCCGAACACGGACCGACGAC 2175487
||| || || | ||||||||| || | || ||||| ||| || || ||||| |
Sbjct 48388 CAGGCGCTGGGCGTACTCGACGGCGGTTTCCGGGTCGTGGATCGAGCAGGGGCCGACCAT 48447
Query 2175488 CACCAAGAGACG 2175499
|||| |||||
Sbjct 48448 GACCAGCAGACG 48459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915807711310436
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |