Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10- 07] 4,124 sequences; 47,007,994 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1456 105 4e-18 seq3796 93.3 3e-14 >seq1456 Length=54918 Score = 105 bits (116), Expect = 4e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||||||||||||| ||||| ||||| || || |||| | || Sbjct 54901 AGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCC 54842 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||| ||||| || |||||||| | || | ||||||||||| Sbjct 54841 TCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 54782 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | | |||||| || | ||| |||||| Sbjct 54781 TGGATCTTGCTCTTGACGTTGTCGATGGTGTCGCTCGACTCGACCTCGAGGGTGATGGTC 54722 Query 34946 TTTCCCGT 34953 || || || Sbjct 54721 TTGCCAGT 54714 >seq3796 Length=68498 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 32801 AGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 32742 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||||||||| || |||||||| | || | ||||||||||| Sbjct 32741 TCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 32683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325676430272756