Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10- 07] 4,124 sequences; 47,007,994 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1456 109 6e-19 seq3624 100 3e-16 >seq1456 Length=54918 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || || ||||| || ||||||||||||| | ||| | || || Sbjct 54615 ACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCCTCA 54556 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || || | ||||||||||| || || |||||||| || || || Sbjct 54555 AGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGG 54496 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||| ||||| || || ||||| || ||||| || Sbjct 54495 ATCTTGCTCTTGACGTTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTG 54436 Query 134685 CCGGT 134689 ||||| Sbjct 54435 CCGGT 54431 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || ||| ||||| || |||||||||||| Sbjct 54916 CCGCCGCGGAGACGGAGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 54857 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| ||||| || ||||||| |||||||| || || || Sbjct 54856 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 54797 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | |||||| ||| || || Sbjct 54796 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCGCTCGACTCGACC 54737 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 ||||| || ||||| || || || Sbjct 54736 TCGAGGGTGATGGTCTTGCCAGT 54714 >seq3624 Length=35007 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 8253 CGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAG 8312 ||||||||||| || | |||| ||||||| ||| |||||| ||| ||||| || | Sbjct 24629 CGAAACCGGTAACCCCTTCATGTTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAA 24688 Query 8313 CAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCC 8372 ||| | ||||||||| || || ||| |||||| ||||| || |||||| ||| || Sbjct 24689 GAACCTTGGCACCATTCGTAGCTCCAACCTGTGCTGCGAAATCGTCGAGTACACCGCTCC 24748 Query 8373 CGACGAAGTGGCCGTTTGCAATCTAGCGTC 8402 || ||||| || || ||||| ||||||| Sbjct 24749 TGATGAAGTCGCTGTGTGCAACTTAGCGTC 24778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505372346712480