Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10-
07] 4,124 sequences; 47,007,994 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq4009 89.7 7e-13
>seq4009
Length=43835
Score = 89.7 bits (98), Expect = 7e-13
Identities = 299/459 (65%), Gaps = 20/459 (4%)
Strand=Plus/Minus
Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372
||| || ||| || ||||| ||||||||||| |||||||| || || || ||||| |
Sbjct 33986 CATGACACCCGCCTTCTGGTAGTCACCAACGCGCTTCTCGAAGAAGTTCGTCTTGCCGTT 33927
Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432
| || || || |||||||| || || || || || | || || | || || ||
Sbjct 33926 GAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGTACTTCTTGTTGCC 33867
Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATT-TCACAAT 39491
| | | || | || ||||| || || ||||| ||| | || | |
Sbjct 33866 CAGCGCCACCAGCAGGCGGTCAGCAACGAACTCGATGTACTGGCACATGAGAGTCGCG-T 33808
Query 39492 TCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGG 39551
|||| || | || || || ||||| ||||| || ||||| || ||||| || || |
Sbjct 33807 TCATGCCAAGAAGAGCGACGGGAAGAGCGTCCGTGAGGAACTCCTTCTCGATCTCGACAG 33748
Query 39552 CCTCTGTTATTATCGATGTTACTACCTCATC--ACTCGGTG----GATGCAA-TAAATGT 39604
|||| || || ||| || |||| | | |||| | | | | | | ||||
Sbjct 33747 CCTCGGTGATGATC----TT-----CTCAACGGATTCGGGGCTGGGCTTCGACTTGATGT 33697
Query 39605 TTAA--ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGT 39662
| ||| | |||||||||||| ||| | ||||||||| | | || | || |
Sbjct 33696 GCGAGAACAGCAGGCAGGCGAAGTCGGTATGCATGCCCTCATCGCGAGAGATGAGCTCAT 33637
Query 39663 TAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG 39722
| || || || | |||||||| || |||||||| |||||||| || |||| || ||||
Sbjct 33636 TGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATGGAGGCGAAAG 33577
Query 39723 ATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAA 39761
| || |||||||| || || || || || || ||||
Sbjct 33576 AGCCGCTGAAGAAGATACCCTCGACGGCCGCGAAAGCAA 33538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686873389851360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |