Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10-
07] 4,124 sequences; 47,007,994 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq3624 89.7 6e-13
seq3865 87.8 2e-12
seq4009 86.0 8e-12
>seq3624
Length=35007
Score = 89.7 bits (98), Expect = 6e-13
Identities = 296/458 (65%), Gaps = 2/458 (0%)
Strand=Plus/Minus
Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301
|| || || ||||| ||||| ||||| | | |||||||| | ||||| ||
Sbjct 24778 GACGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGACGATTTCGCAGCAC 24719
Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361
| |||||| || ||| || || | ||||| ||||| ||||| |||||| |||
Sbjct 24718 AGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCC 24659
Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-C 111420
||||| | |||| |||| | || || || ||| | | ||| || || | ||| | |
Sbjct 24658 TTGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGATCGCGTACCAGAGC 24599
Query 111421 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 111480
|| | | || ||| | || | || |||||| ||| |||| |||||||||
Sbjct 24598 TTCTGAGCACGG-ACAGTCTCGCGACCACGACCCTCCTTCTCATACTGCTCGTAGAGGGC 24540
Query 111481 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 111540
|| || |||||||| |||||| ||||| || || || || || | || |
Sbjct 24539 CTCGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTAGGGCACATGAGGGT 24480
Query 111541 CCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 111600
||| || | |||||| ||||||||||| || || |||||||| || | | ||
Sbjct 24479 CCAGGTGCCGTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCGTAGAA 24420
Query 111601 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCAT 111660
|| || | | ||| |||| || | || ||||| || | || || || |
Sbjct 24419 AAGGTCACGAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGGTCGAGAAAGCTGAA 24360
Query 111661 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 111698
|| ||| || ||||| ||||| || |||| |||| ||
Sbjct 24359 GACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAG 24322
>seq3865
Length=68630
Score = 87.8 bits (96), Expect = 2e-12
Identities = 274/413 (66%), Gaps = 25/413 (6%)
Strand=Plus/Plus
Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599
|| || |||||||| ||||| | ||| || | || |||||||||||| ||||
Sbjct 2441 AAACCGTCCATCTCCGTGAGGATTTGGTTCAGGGTACTTTCTCTCTCATC-GTTGC---- 2495
Query 11600 ATACCACC--AGCACTGCGTTGC-------TTGCCCACCGCATCAATCTCATCAATGAAG 11650
||| || ||| |||| | || ||||| | ||||| || ||||| |||||
Sbjct 2496 -CACCGCCAAAGCTCTGCTTCGCTCTTGATTTGCCGATAGCATCGATTTCATCGATGAAA 2554
Query 11651 ACAATACA-TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACC 11709
| ||| || || || | ||| || || || | || || || || || || || ||
Sbjct 2555 ATAATGCAGGGGGTGCTCTTC-CGCGCTGTTGCGAAAAGGTCACGGACTCTAGAGGGGCC 2613
Query 11710 CACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAGCACTGGATGAATGGGACATTT 11767
||||| || ||||||||||| || | | | || | | || || ||| || || |
Sbjct 2614 GACACCCACGAACATCTCCACGAACTCGGAACCGC-TAACGCT-GAAGAAAGGCACTTGA 2671
Query 11768 GATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGA 11827
|||||||| || |||| ||||| | ||||| || ||||| || ||| | ||||
Sbjct 2672 GATTCACCGGCAGTGGCCTTAGCGAGCAACGTCTTACCGGTACCGGGAGGACCTGAGAGA 2731
Query 11828 AGGGCGCCTCGGGGGATCTTGGCACC--ACTTCCAAAATATCTCTCGGGTTGCTTGAGAA 11885
| ||| || || ||||| |||||||| |||| | | | | | | |||| |||||| |
Sbjct 2732 ATGGCACCACGCGGGATTTTGGCACCGAGCTTCTGATAGA-CAC-CAGGTTCCTTGAGGA 2789
Query 11886 AATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938
|| || | ||| | ||| | |||||| |||| || || |||| |||
Sbjct 2790 AACTGACGAACTCCATGATTTCTTGCTTGGCCTCGTCCATTCCAGCAACGTCA 2842
>seq4009
Length=43835
Score = 86.0 bits (94), Expect = 8e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736
|||||||| || || || || ||||| ||||| | ||| |||||||| || ||||||
Sbjct 33661 CCCTCATCGCGAGAGATGAGCTCATTGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTC 33602
Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796
|| | ||| |||| | | ||| || ||| ||||||||||||||| || ||| ||
Sbjct 33601 TTGAGCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAGATACCCTCGACGGCCGCGAAA 33542
Query 122797 GCAAAAAGGCGTTCGGCGAAGG 122818
|||| ||||| |||||||
Sbjct 33541 GCAATGAGGCGCGATGCGAAGG 33520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627999624950400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |