Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10- 07] 4,124 sequences; 47,007,994 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3624 89.7 6e-13 seq3865 87.8 2e-12 seq4009 86.0 8e-12 >seq3624 Length=35007 Score = 89.7 bits (98), Expect = 6e-13 Identities = 296/458 (65%), Gaps = 2/458 (0%) Strand=Plus/Minus Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 || || || ||||| ||||| ||||| | | |||||||| | ||||| || Sbjct 24778 GACGCTAAGTTGCACACAGCGACTTCATCAGGAGCGGTGTACTCGACGATTTCGCAGCAC 24719 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 | |||||| || ||| || || | ||||| ||||| ||||| |||||| ||| Sbjct 24718 AGGTTGGAGCTACGAATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCC 24659 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-C 111420 ||||| | |||| |||| | || || || ||| | | ||| || || | ||| | | Sbjct 24658 TTGTACAACATGAAGGGGTTACCGGTTTCGACCTGGGCCTCGAGGATCGCGTACCAGAGC 24599 Query 111421 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 111480 || | | || ||| | || | || |||||| ||| |||| ||||||||| Sbjct 24598 TTCTGAGCACGG-ACAGTCTCGCGACCACGACCCTCCTTCTCATACTGCTCGTAGAGGGC 24540 Query 111481 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 111540 || || |||||||| |||||| ||||| || || || || || | || | Sbjct 24539 CTCGAATTCCTCACCATAGACGTCGGCAAGACCAGGGCACTCGTTAGGGCACATGAGGGT 24480 Query 111541 CCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 111600 ||| || | |||||| ||||||||||| || || |||||||| || | | || Sbjct 24479 CCAGGTGCCGTTCTGCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCGTAGAA 24420 Query 111601 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCAT 111660 || || | | ||| |||| || | || ||||| || | || || || | Sbjct 24419 AAGGTCACGAGCGCGAACCTCCTCTTTTCCGTGGTTCTTACGGAGGTCGAGAAAGCTGAA 24360 Query 111661 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 111698 || ||| || ||||| ||||| || |||| |||| || Sbjct 24359 GACATCAGCATGCCACGGCTCGAGGTAGATGGCGAAAG 24322 >seq3865 Length=68630 Score = 87.8 bits (96), Expect = 2e-12 Identities = 274/413 (66%), Gaps = 25/413 (6%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || || |||||||| ||||| | ||| || | || |||||||||||| |||| Sbjct 2441 AAACCGTCCATCTCCGTGAGGATTTGGTTCAGGGTACTTTCTCTCTCATC-GTTGC---- 2495 Query 11600 ATACCACC--AGCACTGCGTTGC-------TTGCCCACCGCATCAATCTCATCAATGAAG 11650 ||| || ||| |||| | || ||||| | ||||| || ||||| ||||| Sbjct 2496 -CACCGCCAAAGCTCTGCTTCGCTCTTGATTTGCCGATAGCATCGATTTCATCGATGAAA 2554 Query 11651 ACAATACA-TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACC 11709 | ||| || || || | ||| || || || | || || || || || || || || Sbjct 2555 ATAATGCAGGGGGTGCTCTTC-CGCGCTGTTGCGAAAAGGTCACGGACTCTAGAGGGGCC 2613 Query 11710 CACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAGCACTGGATGAATGGGACATTT 11767 ||||| || ||||||||||| || | | | || | | || || ||| || || | Sbjct 2614 GACACCCACGAACATCTCCACGAACTCGGAACCGC-TAACGCT-GAAGAAAGGCACTTGA 2671 Query 11768 GATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGA 11827 |||||||| || |||| ||||| | ||||| || ||||| || ||| | |||| Sbjct 2672 GATTCACCGGCAGTGGCCTTAGCGAGCAACGTCTTACCGGTACCGGGAGGACCTGAGAGA 2731 Query 11828 AGGGCGCCTCGGGGGATCTTGGCACC--ACTTCCAAAATATCTCTCGGGTTGCTTGAGAA 11885 | ||| || || ||||| |||||||| |||| | | | | | | |||| |||||| | Sbjct 2732 ATGGCACCACGCGGGATTTTGGCACCGAGCTTCTGATAGA-CAC-CAGGTTCCTTGAGGA 2789 Query 11886 AATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 || || | ||| | ||| | |||||| |||| || || |||| ||| Sbjct 2790 AACTGACGAACTCCATGATTTCTTGCTTGGCCTCGTCCATTCCAGCAACGTCA 2842 >seq4009 Length=43835 Score = 86.0 bits (94), Expect = 8e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 |||||||| || || || || ||||| ||||| | ||| |||||||| || |||||| Sbjct 33661 CCCTCATCGCGAGAGATGAGCTCATTGGAGAAAGTCAAACCAGGCATGAGGCCACGCTTC 33602 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| |||| | | ||| || ||| ||||||||||||||| || ||| || Sbjct 33601 TTGAGCCAGAAAATGGAGGCGAAAGAGCCGCTGAAGAAGATACCCTCGACGGCCGCGAAA 33542 Query 122797 GCAAAAAGGCGTTCGGCGAAGG 122818 |||| ||||| ||||||| Sbjct 33541 GCAATGAGGCGCGATGCGAAGG 33520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627999624950400