Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10- 07] 4,124 sequences; 47,007,994 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3624 138 1e-27 seq4009 95.1 1e-14 >seq3624 Length=35007 Score = 138 bits (152), Expect = 1e-27 Identities = 257/373 (69%), Gaps = 6/373 (2%) Strand=Plus/Plus Query 104607 CTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTC 104666 || |||| |||| || ||||| ||||| || ||| || | || || || | ||| Sbjct 24322 CTTTCGCCATCTACCTCGAGCCGTGGCATGCTGATGTCTTCAGCTTTCTCGACCTCCGTA 24381 Query 104667 TCAACCAAGGTGACGAGGAGG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCC 104724 ||||| || | ||||||| |||| | || || || |||| ||||||||||||||| Sbjct 24382 AGAACCACGGAAAAGAGGAGGTTCGCGCT--CGTGACCTTTTCTACGCTCTCTGGATTCC 24439 Query 104725 AGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAA 104784 ||||||||||||||| | |||||| ||| |||| ||| | ||| | || || || | Sbjct 24440 CGATCTCTTCATGAAGCGTGTTGAGCAGAACGGCACCTGGACCCTCATGTGCCCTAACGA 24499 Query 104785 GGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGA 104844 | |||||||| |||| | | |||||||| || || ||||| ||| |||| || Sbjct 24500 GTGCCCTGGTCTTGCCGACGTCTATGGTGAGGAATTCGAGGCCCTCTACGAGCAGTATGA 24559 Query 104845 GGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCA 104903 | | || ||||| | | ||| || | ||| | || | | ||| | || || ||| Sbjct 24560 GAAGGAGGGTCGTGGTCGCGAGACTGTCCGTGCT-CAGAAGCTCTGGTACGCGATCCTCG 24618 Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963 || | || ||| || |||| || | |||| | ||||| ||| ||| |||| |||| Sbjct 24619 AGGCCCAGGTCGAAACCGGTAACCCCTTCATGTTGTACAAGGACCACTGCAACCGCAAGA 24678 Query 104964 GTAATCAAAAGAA 104976 | || || ||||| Sbjct 24679 GCAACCAGAAGAA 24691 >seq4009 Length=43835 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 94806 GCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTAT 94865 ||| ||| | || || ||| || ||||||||||||||| || || ||| | | || Sbjct 33530 GCGCCTCATTGCTTTCGCGGCCGTCGAGGGTATCTTCTTCAGCGGCTCTTTCGCCTCCAT 33589 Query 94866 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTC 94925 || |||||||||||||| || |||||||| ||| | |||||||| ||||| ||||| Sbjct 33590 TTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTTTGACTTTCTCCAATGAGCTCATCTC 33649 Query 94926 TCGTGACGAGGG 94937 ||| || ||||| Sbjct 33650 TCGCGATGAGGG 33661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583230732905760