Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10-
07] 4,124 sequences; 47,007,994 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq1457 127 2e-24
>seq1457
Length=54532
Score = 127 bits (140), Expect = 2e-24
Identities = 209/299 (70%), Gaps = 2/299 (1%)
Strand=Plus/Plus
Query 6726 CGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785
|||| ||||| || || ||||||| ||||| || |||||| || ||| ||
Sbjct 11937 CGACATAGAACTGCGCGAACATGTGGCAAGGGGGCAGAGCCATCTTCTTCAGGTCCGCCG 11996
Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845
| |||||||||| ||| | ||| | | || | || || ||| | |||||||||
Sbjct 11997 GATTCCACGCGCTCATGATGATGCGGCGATCGTACGGCTTGTTCTTAAGCTTGTCGATCA 12056
Query 6846 CGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCC 6904
| | | |||||| ||| | || |||||| ||||||| | |||| || || |||||
Sbjct 12057 CATCCGCCAGCTGATCCACACCTTGTCCCCTGTAGTCCGTCGTCGCGTCCACG-TACTCA 12115
Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGAT 6964
|| || ||||| | ||||||||| |||||||| ||||| | |||||||||||| ||
Sbjct 12116 GCGCCGAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCTAGGTCGCCCTCCTCGCGGTGC 12175
Query 6965 GGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023
| || || |||| || || || || || |||| | | ||||||||||| || ||
Sbjct 12176 GAGAGGCCGACACTGTCGAGGAACTCGCGCGATCCGTTACCATCCCAGATCTTGACGCC 12234
Score = 127 bits (140), Expect = 2e-24
Identities = 209/299 (70%), Gaps = 2/299 (1%)
Strand=Plus/Minus
Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381
|| || ||||||||||| | | |||| || || || || || |||| || || |
Sbjct 12234 GGCGTCAAGATCTGGGATGGTAACGGATCGCGCGAGTTCCTCGACAGTGTCGGCCTCTCG 12175
Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441
|| |||||||||||| | ||||| |||||||| ||||||||| | ||||| || ||
Sbjct 12174 CACCGCGAGGAGGGCGACCTAGGCCCCGTCTACGGCTTCCAGTGGCGGCACTTCGGCGCT 12115
Query 34442 GAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGT 34500
||||| || || |||| | ||||||| |||||| || | ||| |||||| | | ||
Sbjct 12114 GAGTA-CGTGGACGCGACGACGGACTACAGGGGACAAGGTGTGGATCAGCTGGCGGATGT 12056
Query 34501 GATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCC 34560
|||||||| | ||| || || | || | | ||| | ||| |||||||||| ||
Sbjct 12055 GATCGACAAGCTTAAGAACAAGCCGTACGATCGCCGCATCATCATGAGCGCGTGGAATCC 11996
Query 34561 GAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCG 34619
| ||| || |||||| || ||||| ||||||| || || ||||| ||||
Sbjct 11995 GGCGGACCTGAAGAAGATGGCTCTGCCCCCTTGCCACATGTTCGCGCAGTTCTATGTCG 11937
Score = 82.4 bits (90), Expect = 7e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675
|||||| || | ||||| ||||||||||||||| |||||||||||| || || || ||
Sbjct 11770 GACATGGGCCAACATGTGCGTGAGCAGAGCGTACGAAGCAATGTTGAAGGGAACGCCCAA 11829
Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGC 6715
|||||||| | || || || |||||| | ||| ||||
Sbjct 11830 GCCCATGTCACAGGACCGCTGGTAGAGCAGACAGTGCAGC 11869
Score = 82.4 bits (90), Expect = 7e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 34630 GCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACAT 34689
|||| ||| | |||||| || || || | |||||||| || || || || ||||||||
Sbjct 11869 GCTGCACTGTCTGCTCTACCAGCGGTCCTGTGACATGGGCTTGGGCGTTCCCTTCAACAT 11810
Query 34690 TGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729
|||| ||||||||||||||| ||||| | || ||||||
Sbjct 11809 TGCTTCGTACGCTCTGCTCACGCACATGTTGGCCCATGTC 11770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448239292073280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |