Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10-
07] 4,124 sequences; 47,007,994 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq1456 154 3e-32
seq3796 98.7 2e-15
seq3624 96.9 8e-15
>seq1456
Length=54918
Score = 154 bits (170), Expect = 3e-32
Identities = 148/190 (78%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| |||||||| || ||||| || |||||||| || || || || | |||||
Sbjct 54618 AGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCC 54559
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| ||||| || || || || |||| ||||||||||||
Sbjct 54558 TCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCC 54499
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| ||||||||||| || || |||||||| ||||| |||
Sbjct 54498 TGGATCTTGCTCTTGACGTTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTC 54439
Query 211083 TTTCCCGTGA 211092
|| || ||||
Sbjct 54438 TTGCCGGTGA 54429
Score = 134 bits (148), Expect = 3e-26
Identities = 145/191 (76%), Gaps = 6/191 (3%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| |||||| ||| || |||||||| || || | || || | || ||
Sbjct 54901 AGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCC 54842
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| ||||| || ||||| || ||||| || |||| || |||||||||
Sbjct 54841 TCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 54782
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079
|||||||| || ||||| ||||||||||| ||| || |||||||| |||||
Sbjct 54781 TGGATCTTGCTCTTGACGTTGTCGATGGTGTC---GCTCGACTCGACCTCGAGGGTGATG 54725
Query 211080 GTCTTTCCCGT 211090
||||| || ||
Sbjct 54724 GTCTTGCCAGT 54714
>seq3796
Length=68498
Score = 98.7 bits (108), Expect = 2e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| ||||||||||| || ||||| || |||||||| || || | || || | |||||
Sbjct 32801 AGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 32742
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
|| ||||||||||| |||||||| || || || ||||| || |||| || ||||||||
Sbjct 32741 TCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 32683
>seq3624
Length=35007
Score = 96.9 bits (106), Expect = 8e-15
Identities = 193/283 (68%), Gaps = 6/283 (2%)
Strand=Plus/Minus
Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144
|||| |||||| ||||||||||| | |||| ||| || |||||| ||||||||
Sbjct 24697 CCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAG-TGG--TCCTTGTACAACATGAAGGGG 24641
Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204
| || || | || ||| |||| || | ||| |||| ||| || |||||||||
Sbjct 24640 TTACCGGTTTCGACCTGGGCCTCGAGGATCGCGTACCAGAGCTTCTGAGCACGGACAGTC 24581
Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264
| | || || ||||| |||| | |||||| ||||||||||| ||||||
Sbjct 24580 TCGCGACCACGACCCTCCTTCTCATACTGCTCGTAGAGGGCCTCGAATTCCTCACCATAG 24521
Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324
|| || | ||||| || ||| || ||||| | ||| |||| |||| | ||
Sbjct 24520 ACGTCGGCAAGACCAGGGCACTCGTTAGGGCACATGAGGGTCCAGGTGCCGTTCTGCTCA 24461
Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367
|| || ||||||||||| || | |||||| || |||||||
Sbjct 24460 ACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCGTAGAAAA 24418
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159090751857260
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |