Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10- 07] 4,124 sequences; 47,007,994 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1456 154 3e-32 seq3796 98.7 2e-15 seq3624 96.9 8e-15 >seq1456 Length=54918 Score = 154 bits (170), Expect = 3e-32 Identities = 148/190 (78%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| || ||||| || |||||||| || || || || | ||||| Sbjct 54618 AGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCC 54559 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || || || || |||| |||||||||||| Sbjct 54558 TCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCC 54499 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || || |||||||| ||||| ||| Sbjct 54498 TGGATCTTGCTCTTGACGTTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTC 54439 Query 211083 TTTCCCGTGA 211092 || || |||| Sbjct 54438 TTGCCGGTGA 54429 Score = 134 bits (148), Expect = 3e-26 Identities = 145/191 (76%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| |||||| ||| || |||||||| || || | || || | || || Sbjct 54901 AGGACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCC 54842 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || ||||| || ||||| || |||| || ||||||||| Sbjct 54841 TCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 54782 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| || ||||| ||||||||||| ||| || |||||||| ||||| Sbjct 54781 TGGATCTTGCTCTTGACGTTGTCGATGGTGTC---GCTCGACTCGACCTCGAGGGTGATG 54725 Query 211080 GTCTTTCCCGT 211090 ||||| || || Sbjct 54724 GTCTTGCCAGT 54714 >seq3796 Length=68498 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| || ||||| || |||||||| || || | || || | ||||| Sbjct 32801 AGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 32742 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| |||||||| || || || ||||| || |||| || |||||||| Sbjct 32741 TCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 32683 >seq3624 Length=35007 Score = 96.9 bits (106), Expect = 8e-15 Identities = 193/283 (68%), Gaps = 6/283 (2%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 |||| |||||| ||||||||||| | |||| ||| || |||||| |||||||| Sbjct 24697 CCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAG-TGG--TCCTTGTACAACATGAAGGGG 24641 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 | || || | || ||| |||| || | ||| |||| ||| || ||||||||| Sbjct 24640 TTACCGGTTTCGACCTGGGCCTCGAGGATCGCGTACCAGAGCTTCTGAGCACGGACAGTC 24581 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 | | || || ||||| |||| | |||||| ||||||||||| |||||| Sbjct 24580 TCGCGACCACGACCCTCCTTCTCATACTGCTCGTAGAGGGCCTCGAATTCCTCACCATAG 24521 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 || || | ||||| || ||| || ||||| | ||| |||| |||| | || Sbjct 24520 ACGTCGGCAAGACCAGGGCACTCGTTAGGGCACATGAGGGTCCAGGTGCCGTTCTGCTCA 24461 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367 || || ||||||||||| || | |||||| || ||||||| Sbjct 24460 ACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCGTAGAAAA 24418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159090751857260