Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307955.1_202015-10- 07] 4,124 sequences; 47,007,994 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1457 125 5e-24 >seq1457 Length=54532 Score = 125 bits (138), Expect = 5e-24 Identities = 254/377 (67%), Gaps = 0/377 (0%) Strand=Plus/Plus Query 27348 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 27407 |||||| || || |||||||| || ||| || ||||| |||| || |||||| Sbjct 11959 GTGGCAAGGGGGCAGAGCCATCTTCTTCAGGTCCGCCGGATTCCACGCGCTCATGATGAT 12018 Query 27408 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 27467 ||| | || | || |||||| | | ||| | | | |||||||||||| || Sbjct 12019 GCGGCGATCGTACGGCTTGTTCTTAAGCTTGTCGATCACATCCGCCAGCTGATCCACACC 12078 Query 27468 CATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAA 27527 ||| |||||| | || |||| |||||| || ||||| |||| ||| ||||| Sbjct 12079 TTGTCCCCTGTAGTCCGTCGTCGCGTCCACGTACTCAGCGCCGAAGTGCCGCCACTGGAA 12138 Query 27528 CCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAA 27587 ||||| || || || ||||| ||||| || | |||| || ||| |||| | || Sbjct 12139 GCCGTAGACGGGGCCTAGGTCGCCCTCCTCGCGGTGCGAGAGGCCGACACTGTCGAGGAA 12198 Query 27588 GTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTT 27647 || | || ||||| | ||||||||||| || || ||||||||| || || Sbjct 12199 CTCGCGCGATCCGTTACCATCCCAGATCTTGACGCCAGCCTCGGAGAGAGGCTTCGATGA 12258 Query 27648 TGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTT 27707 |||| ||| ||| |||||||| || || | | |||||| | ||||| | ||| Sbjct 12259 TGTGCTGCCTGCGACAAACCACAGGAGTTCGGCTATGACGGCGCGCAGGAAGACGCGCTT 12318 Query 27708 GGTCGTGAGGAGGGGAA 27724 ||| |||||||| |||| Sbjct 12319 GGTGGTGAGGAGCGGAA 12335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369488628106244