Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Madurella_20mycetomatis_20[genbank_20GCA_5F001275765.2_202016-03-09] 804 sequences; 36,704,944 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq32 131 2e-25 seq177 125 7e-24 seq20 116 4e-21 >seq32 Length=147543 Score = 131 bits (144), Expect = 2e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || ||||| | || || || || | Sbjct 71006 ATGCAAATTTTCGTCAAGACTCTGACTGGCAAGACGATCACGTTGGAGGTGGAGTCCTCG 71065 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||| ||| || | ||||| ||||||||||| | || || Sbjct 71066 GACACCATTGACAACG-TCAAATCAAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCA 71124 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| ||||||||| ||| |||| |||| || ||||| ||||||||| Sbjct 71125 ACAGCGTCTCATCTTCGCGGGCAAGCAGTTGGAGGACGGTCGGACCCTGTCCGACTACAA 71184 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| ||| ||||| Sbjct 71185 CATCCAGAAGGAGAGCACTCTGCA 71208 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| || || || || || |||| || ||| | | Sbjct 71234 ATGCAGATTTTCGTCAAGACGCTCACAGGAAAGACGATTACGCTCGAGGTGGAATCTTCG 71293 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || |||| ||||| ||||||||||| | || || Sbjct 71294 GACACAATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCGCCTGATCA 71352 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||||||||| ||| |||| || | || || || |||||||| Sbjct 71353 GCAGCGTCTCATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGGACTCTGTCTGACTACAA 71412 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| ||| ||||| | ||| |||| Sbjct 71413 TATCCAGAAGGAGAGCACACTGCACTTGGTGCTGCG 71448 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || || || ||||||||| |||| || ||| | |||| | | | | | ||||| Sbjct 70802 ACCGGAAAGACCATCACCCTCGAGGTGGAATCGTCCGATACCATCGATAATGTCAAGTCG 70861 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| || || ||||| || || | |||||||| || || || | ||||||||| Sbjct 70862 AAGATTCAGGATAAGGAGGGTATTCCGCCTGACCAGCAGCGCCTGATTTTCGCGGGCAAG 70921 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | || |||||| || ||||| |||||||||||| | ||||| ||| Sbjct 70922 CAGCTCGAGGATGGTCGTACCCTCTCGGATTACAATATCCAGAAGGAGTCGACGCTCCAT 70981 Query 40894 CTAGT 40898 || || Sbjct 70982 CTCGT 70986 >seq177 Length=70791 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| | || || || | | | Sbjct 29615 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC 29556 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| ||||||||||| | |||||| Sbjct 29555 GACACCATCGACAATGTCAAGTCTAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 29496 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| ||||| || || | || || ||| |||||| ||| Sbjct 29495 CAGCGCCTAATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGGACTCTCTCCGACTATAAC 29436 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| ||| || || || ||| | ||| || | || || Sbjct 29435 ATCCAGAAGGAGAGCACCCTCCACCTTGTGCTCCGCCTGCGTGGTGG 29389 >seq20 Length=161045 Score = 116 bits (128), Expect = 4e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 |||| || ||||| || || |||||||| || || |||||| |||| ||||| || | | Sbjct 65655 TGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTCGAGGTCGAGTCCTCGG 65596 Query 40751 ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGC 40810 | | | | | | ||||| || || | ||||| |||||||||||| | ||||||| Sbjct 65595 ATACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGC 65536 Query 40811 AACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 40870 | || || |||| || ||||| ||||| || |||| || |||||| |||||||||| Sbjct 65535 AGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCTGACTACAACA 65476 Query 40871 TCCAGAAGG 40879 | || |||| Sbjct 65475 TTCAAAAGG 65467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515214022047040