Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Madurella_20mycetomatis_20[genbank_20GCA_5F001275765.2_202016-03-09] 804 sequences; 36,704,944 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq32 149 7e-31 seq177 131 2e-25 seq20 93.3 5e-14 >seq32 Length=147543 Score = 149 bits (164), Expect = 7e-31 Identities = 167/218 (77%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||| |||| |||||||||||| || |||||||| |||| ||||||||| | Sbjct 71449 ACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATATTGTAGTCAGACAGAGTCCGACC 71390 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | |||||| || ||||| ||||| |||||||| || | ||| | || |||||| Sbjct 71389 ATCCTCCAACTGCTTGCCCGCGAAGATGAGACGCTGCTGATCAGGCGGGATGCCCTCCTT 71330 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 |||| ||| | || | |||| ||| | | | ||||| |||||||| |||| ||| Sbjct 71329 GTCC-TGAATCTTGGACTTGA-CGTTGTCAATTGTGTCCGAAGATTCCACCTCGAGCGTA 71272 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || || |||||||| || || || ||||| Sbjct 71271 ATCGTCTTTCCTGTGAGCGTCTTGACGAAAATCTGCAT 71234 Score = 132 bits (146), Expect = 6e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| |||| ||||||||||| || || ||||| || | ||| ||||| |||| || Sbjct 71214 ACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGACCGTCCTCC 71155 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | |||||| || ||||| ||||| ||||| || || | ||| | || |||||||||| | Sbjct 71154 AACTGCTTGCCCGCGAAGATGAGACGCTGTTGATCAGGCGGGATGCCCTCCTTGTCCTGG 71095 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 || ||| ||||| ||| | | | ||||| || ||||| || | |||||| || || Sbjct 71094 ATCTTTGATTTGA-CGTTGTCAATGGTGTCCGAGGACTCCACCTCCAACGTGATCGTCTT 71036 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || ||||| || || |||||||| Sbjct 71035 GCCAGTCAGAGTCTTGACGAAAATTTGCAT 71006 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || ||||||||||| | || || || | || || |||||||| || ||||| Sbjct 70969 CTCCTTCTGGATATTGTAATCCGAGAGGGTACGACCATCCTCGAGCTGCTTGCCCGCGAA 70910 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||| | ||| | | |||||| ||| ||| | || | |||| Sbjct 70909 AATCAGGCGCTGCTGGTCAGGCGGAATACCCTCCTTATCC-TGAATCTTCGACTTGACAT 70851 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 | | | || ||| ||||||||| |||| |||||||| || || || Sbjct 70850 TATCGATGGTATCGGACGATTCCACCTCGAGGGTGATGGTCTTTCCGGT 70802 >seq177 Length=70791 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || || || || | |||||||| | || || |||||||| || Sbjct 29419 GTGCTCTCCTTCTGGATGTTATAGTCGGAGAGAGTCCGGCCATCCTCGAGCTGCTTGCCG 29478 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 || || || || ||||||||||||| ||| | || |||||||||| ||| || ||| Sbjct 29479 GCAAAGATTAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTAGACTTG 29538 Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166 | | | | ||||||||||| ||||| || | ||||| || |||||||| || ||| Sbjct 29539 ACATTGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTC 29598 Query 43167 TTTACAAAGATTTGCAT 43183 || || ||||| ||||| Sbjct 29599 TTCACGAAGATCTGCAT 29615 >seq20 Length=161045 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||||||||| ||||| |||| || || || |||| || |||||||| || || || | Sbjct 65467 CCTTTTGAATGTTGTAGTCAGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGA 65526 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || ||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 65527 TCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 65586 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | || || || || || |||| ||||| || || ||||| || ||||| || | Sbjct 65587 CGATGGTATCCGAGGACTCGACCTCGAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGA 65646 Query 43174 AGATTTGCA 43182 |||| |||| Sbjct 65647 AGATCTGCA 65655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571811853233120