Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Madurella_20mycetomatis_20[genbank_20GCA_5F001275765.2_202016-03-09] 804 sequences; 36,704,944 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq364 111 3e-19 seq320 91.5 3e-13 seq16 86.0 1e-11 >seq364 Length=35427 Score = 111 bits (122), Expect = 3e-19 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| ||||| |||||||| ||||| || ||| ||||| |||| ||| || Sbjct 12749 CTCACTCGCGCATGCGCGGTCTCTCTGGTGGTCAGCGTGTCAAGGTTGTGCTCGCCGCTT 12808 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 |||| |||||||| |||||| ||||||| ||||||||||||||||||||||| ||||| Sbjct 12809 GCTC-GTGGCAACGTCCTCACCTGATCGTCCTCGACGAGCCTACCAACTATCTCGACCGT 12867 Query 280821 GAGAGCCTGGGCGCTCTG 280838 || || || |||||| Sbjct 12868 GACTCGCTTGGTGCTCTG 12885 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||||| || ||||| ||||| || |||||||| || ||||| ||||| ||||||||| | Sbjct 12175 GTCATCGGCCCCAACGGTGCTGGCAAGTCTACACTCATCAACGTCCTTACTGGCGAGCTC 12234 Query 280233 CAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292 |||||| || | | ||||| ||||| || || || ||| || || Sbjct 12235 ATCCCCACTGGCGGCGAGATCTACCAGCATGAGAACATTCGTATTGCCTACATCAAGCAA 12294 Query 280293 CACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352 || || ||| || ||||| |||||||||||| ||| || | | |||||||||||| Sbjct 12295 CATGCCTTCGCTCATATCGATAACCACCTGGACTCGACCCCATCCGAGTACATTCAGTGG 12354 Query 280353 CG 280354 || Sbjct 12355 CG 12356 Score = 87.8 bits (96), Expect = 4e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| || || |||| ||||||||||| || |||| |||||||| || ||| Sbjct 11347 GGCGAGGACCTCTGCAACTGCACCTTCTCGCTCGCCTACGGTGCCAAGATTCTCCTCAAC 11406 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 ||| |||| ||||||||||| | || || ||||| ||| ||||| || | Sbjct 11407 CAGACCAGCCTGCGTCTCAAGCGTGGCCAACGCTACGGTCTGTGCGGCCCCAACGGTTCC 11466 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||| ||||| |||| ||| | || || || ||||| ||| Sbjct 11467 GGCAAGTCTACTCTGATGCGTGCCATCAACAACGAGCAGGTCGAGGGCTTCCCTAA-GCA 11525 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || || | ||| || | || ||||||||| | ||||| Sbjct 11526 GAGCGAAGTCAAGACTGTCTTCGTCGAGCACGACCTGGACTC 11567 >seq320 Length=41428 Score = 91.5 bits (100), Expect = 3e-13 Identities = 205/306 (67%), Gaps = 8/306 (3%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTC----TCGCGGTATGATGTGGAGCGTTCTAT 218573 |||||| || ||||||||||||| || ||| | || | | | | ||| ||||| Sbjct 24947 GACTTCGTCCACAAGGAGCTCATCCTCTTCAGCATGGCCG-ACAACAT---GCGGTCTAT 25002 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 ||| | |||| || ||||| ||||| ||||| ||| || ||| || || ||||| Sbjct 25003 TCCGTCCATGGTTGACGGCCTGAAGCCCGGTCAGCGCAAGGTCATCTATGGTGCCTTCAA 25062 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||||||||| || || ||||| || ||||| | ||||| || ||||| | | Sbjct 25063 GCGGAACCTCGTCAGCGACCAAAAGGTTGCCGAGTTTGCCGGTTACGTCTCCGAGGTGGC 25122 Query 218694 TGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTA 218753 | ||||| ||||| ||| | |||||| | || | ||| | || ||| |||| Sbjct 25123 CGCATACCACCACGGGGAGGCGTCGCTGCAGCAGACAATCATTGGCCTAGCGCAGAACTA 25182 Query 218754 TGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATT 218813 || || ||| ||| | |||| ||| || | ||| | |||||||| ||||| | Sbjct 25183 CGTTGGATCTAATAACGTCAACTGCCTGGAGCCTAGCGGCAACTTTGGTTCGCGTCTGTC 25242 Query 218814 GGGTGG 218819 ||||| Sbjct 25243 TGGTGG 25248 >seq16 Length=164739 Score = 86.0 bits (94), Expect = 1e-11 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 |||| || ||||| || || || ||||| || || ||||| | ||||| |||||| | Sbjct 125097 TCATCGGCCCCAACGGCGCCGGCAAGTCGACGCTGATCAAGCTTCTGACGGGCGAGGTCA 125038 Query 280234 AGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293 | || | || || |||||||||||| | ||||| | ||| || |||| Sbjct 125037 TCCCGACAGCCGGCAAGGTCGAGAAGCATCCCAATCTCCGGATCGGATACATCAAGCAGC 124978 Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGC 280353 |||| || | ||| |||||| ||||| || | ||| || ||||||||| |||| |||| Sbjct 124977 ACGCGCTCGAGCACGTCGAGATGCACCTCGAGAAGACGCCCAACCAATACCTTCAATGGC 124918 Query 280354 GCTATGC 280360 | || || Sbjct 124917 GGTACGC 124911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027826211996164