Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Madurella_20mycetomatis_20[genbank_20GCA_5F001275765.2_202016-03-09] 804 sequences; 36,704,944 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq177 170 4e-37 seq32 158 2e-33 seq20 132 9e-26 seq364 98.7 2e-15 seq320 96.9 6e-15 >seq177 Length=70791 Score = 170 bits (188), Expect = 4e-37 Identities = 178/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || ||| ||| || ||||||||||| |||||| Sbjct 29389 CCACCACGCAGGCGGAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTATAGTCGGAG 29448 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| ||||| || | |||||| ||||| || || || | || |||||||| || Sbjct 29449 AGAGTCCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATTAGGCGCTGCTGGTCGGGCGGG 29508 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| | |||||| ||||||||||| ||| || || || Sbjct 29509 ATGCCCTCCTTGTCCTGGATCTTAGACTTGACATTGTCGATGGTGTC-GCTCGACTCCAC 29567 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || |||||||||||||| ||||| |||||||| || Sbjct 29568 CTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGAT 29618 >seq32 Length=147543 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || ||| ||| || |||||||| || ||||| Sbjct 71232 CCACCACGCAGACGGAGAACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 71173 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| || || || |||||||| || ||||| ||||| | ||||| || || || Sbjct 71172 AGGGTCCGACCGTCCTCCAACTGCTTGCCCGCGAAGATGAGACGCTGTTGATCAGGCGGG 71113 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||||| |||||| || |||||||| | || || || Sbjct 71112 ATGCCCTCCTTGTCCTGGATCTTTGATTTGACGTTGTCAATGGTGTCCGAGGACTCCACC 71053 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || || || || || ||||||||||| || ||||| Sbjct 71052 TCCAACGTGATCGTCTTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 71006 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| || ||| ||| || ||||| || || || || Sbjct 71460 CCACCACGGAGACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATATTGTAGTCAGAC 71401 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| ||||| || |||||||| || ||||| ||||| | || || || || || Sbjct 71400 AGAGTCCGACCATCCTCCAACTGCTTGCCCGCGAAGATGAGACGCTGCTGATCAGGCGGG 71341 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||||||| || || ||||| | ||||| || Sbjct 71340 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATTGTGTCCGAAGATTCCACC 71281 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || ||||| ||||| ||||||||||| |||||||| Sbjct 71280 TCGAGCGTAATCGTCTTTCCTGTGAGCGTCTTGACGAAAATCTGCAT 71234 >seq20 Length=161045 Score = 132 bits (146), Expect = 9e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||| ||||| || || ||||| || | || || || | |||||| ||||| || || Sbjct 65469 TTTTGAATGTTGTAGTCAGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATC 65528 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || ||||| || || ||||| |||||||| || ||||| | |||||| ||| Sbjct 65529 AGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 65588 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 ||||| || | || || || || | |||||| || || |||||||||||||| ||||| Sbjct 65589 ATGGTATCCGAGGACTCGACCTCGAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAG 65648 Query 68454 ATCTGCATTAT 68464 ||||||| ||| Sbjct 65649 ATCTGCACTAT 65659 >seq364 Length=35427 Score = 98.7 bits (108), Expect = 2e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||| ||||||| | |||||| |||||||||||| || ||||| ||| ||| Sbjct 12356 CGCCACTGAATGTACTCGGATGGGGTCGAGTCCAGGTGGTTATCGATATGAGCGAAGGCA 12297 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGT-CGG 225099 || || | ||| || || || ||||| ||||| | | ||| | ||| || Sbjct 12296 TGTTGCTTGATGTAGGCAATACGAATGTTCTCATGCTGGTAGATCTCGCCGCCAGTGGGG 12237 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || | |||||| || ||||| |||||||| |||| |||||| ||||| |||||||| || Sbjct 12236 ATGAG-CTCGCCAGTAAGGACGTTGATGAGTGTAGACTTGCCAGCACCGTTGGGGCCGAT 12178 Query 225160 CAC 225162 || Sbjct 12177 GAC 12175 Score = 89.7 bits (98), Expect = 9e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225818 GGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCG 225877 ||||||||||| | ||| | || || ||||| | ||| ||| |||||| | ||| Sbjct 11519 GGGAAGCCCTCGACCTGCTCGTTGTTGATGGCACGCATCAGAGTAGACTTGCCGGAACCG 11460 Query 225878 TTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGG 225937 ||||| ||| || ||||| | | || ||||||| |||| || ||| ||| Sbjct 11459 TTGGGGCCGCACAGACCGTAGCGTTGGCCACGCTTGAGACGCAGGCTGGTCTGGTTGAGG 11400 Query 225938 AGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 || |||||| |||| ||||| || ||||| ||| | ||| |||||||| |||||||| Sbjct 11399 AGAATCTTGGCACCGTAGGCGAGCGAGAAGGTGCAGTTGCAGAGGTCCTCGCCCTCCTC 11341 >seq320 Length=41428 Score = 96.9 bits (106), Expect = 6e-15 Identities = 111/148 (75%), Gaps = 5/148 (3%) Strand=Plus/Minus Query 178044 AAGATGTTGGTGAGCTTTGAACCGTATCCATTCCTGCCTGCGCCAGTCCTCTCCTGGGCA 178103 |||||||||| |||||| | ||||| || || | ||| || | ||||||| || |||| Sbjct 23373 AAGATGTTGGCGAGCTTCGCGCCGTAACCGTTGCGGCCACCGACGGTCCTCTTCTCGGCA 23314 Query 178104 TCATCAAAGTTCTCGCCCGTGAGGAGGTGGCCGAAGATGAGCTCGGGCACATAGCA---- 178159 || || |||| ||||||||| || || || |||||||||||||| | ||||| Sbjct 23313 TCGTCGTAGTTGGAGCCCGTGAGAAGATGACCAAAGATGAGCTCGGGGATGTAGCACTTT 23254 Query 178160 TCCTTCTTCGTGTTTCTCCACTGGGATG 178187 ||||| |||||| |||| | |||||| Sbjct 23253 TCCTT-TTCGTGCATCTCGATCGGGATG 23227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921613137694880