Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Madurella_20mycetomatis_20[genbank_20GCA_5F001275765.2_202016-03-09] 804 sequences; 36,704,944 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq32 145 8e-30 seq177 125 8e-24 seq20 93.3 5e-14 >seq32 Length=147543 Score = 145 bits (160), Expect = 8e-30 Identities = 166/218 (76%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||| |||| |||||||||||| || |||||||| |||| ||||||||| | Sbjct 71449 ACGCAGCACCAAGTGCAGTGTGCTCTCCTTCTGGATATTGTAGTCAGACAGAGTCCGACC 71390 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | |||||| || ||||| ||||| |||||||| || | || | || |||||| Sbjct 71389 ATCCTCCAACTGCTTGCCCGCGAAGATGAGACGCTGCTGATCAGGCGGGATGCCCTCCTT 71330 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 42170 |||| ||| | || | |||| ||| | | | ||||| |||||||| |||| ||| Sbjct 71329 GTCC-TGAATCTTGGACTTGA-CGTTGTCAATTGTGTCCGAAGATTCCACCTCGAGCGTA 71272 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || || |||||||| || || || ||||| Sbjct 71271 ATCGTCTTTCCTGTGAGCGTCTTGACGAAAATCTGCAT 71234 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| |||| ||||||||||| || || ||||| || | ||| ||||| |||| || Sbjct 71214 ACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGACCGTCCTCC 71155 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | |||||| || ||||| ||||| ||||| || || | || | || |||||||||| | Sbjct 71154 AACTGCTTGCCCGCGAAGATGAGACGCTGTTGATCAGGCGGGATGCCCTCCTTGTCCTGG 71095 Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 || ||| ||||| ||| | | | ||||| || ||||| || | |||||| || || Sbjct 71094 ATCTTTGATTTGA-CGTTGTCAATGGTGTCCGAGGACTCCACCTCCAACGTGATCGTCTT 71036 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || ||||| || || |||||||| Sbjct 71035 GCCAGTCAGAGTCTTGACGAAAATTTGCAT 71006 Score = 82.4 bits (90), Expect = 8e-11 Identities = 121/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || ||||||||||| | || || || | || || |||||||| || ||||| Sbjct 70969 CTCCTTCTGGATATTGTAATCCGAGAGGGTACGACCATCCTCGAGCTGCTTGCCCGCGAA 70910 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || ||||||||||| | || | | |||||| ||| ||| | || | |||| Sbjct 70909 AATCAGGCGCTGCTGGTCAGGCGGAATACCCTCCTTATCC-TGAATCTTCGACTTGACAT 70851 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 | | | || ||| ||||||||| |||| |||||||| || || || Sbjct 70850 TATCGATGGTATCGGACGATTCCACCTCGAGGGTGATGGTCTTTCCGGT 70802 >seq177 Length=70791 Score = 125 bits (138), Expect = 8e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| || || || || || | |||||||| | || || |||||||| || Sbjct 29419 GTGCTCTCCTTCTGGATGTTATAGTCGGAGAGAGTCCGGCCATCCTCGAGCTGCTTGCCG 29478 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131 || || || || ||||||||||||| || | || |||||||||| ||| || ||| Sbjct 29479 GCAAAGATTAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTAGACTTG 29538 Query 42132 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 42191 | | | | ||||||||||| ||||| || | ||||| || |||||||| || ||| Sbjct 29539 ACATTGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTC 29598 Query 42192 TTTACAAAGATTTGCAT 42208 || || ||||| ||||| Sbjct 29599 TTCACGAAGATCTGCAT 29615 >seq20 Length=161045 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||||||||| ||||| |||| || || || |||| || |||||||| || || || | Sbjct 65467 CCTTTTGAATGTTGTAGTCAGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGA 65526 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || ||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 65527 TCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 65586 Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198 | | || || || || || |||| ||||| || || ||||| || ||||| || | Sbjct 65587 CGATGGTATCCGAGGACTCGACCTCGAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGA 65646 Query 42199 AGATTTGCA 42207 |||| |||| Sbjct 65647 AGATCTGCA 65655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543207340711360