Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Madurella_20mycetomatis_20[genbank_20GCA_5F001275765.2_202016-03-09] 804 sequences; 36,704,944 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq12 203 4e-46 seq291 104 3e-16 seq283 102 1e-15 seq110 87.8 2e-11 >seq12 Length=176190 Score = 203 bits (224), Expect = 4e-46 Identities = 281/395 (71%), Gaps = 15/395 (4%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||||||||| | ||||| | ||| |||||||| |||||||| | || |||||| Sbjct 139932 GCCCTGGTCGACGTACCTGGCCGTATTGTTGAAGACGCGCAGCATGGGAATGATGCCGTT 139873 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| ||||| ||||| || | ||||| ||||| ||| || | ||| | | Sbjct 139872 GGAGGTACCGTTTGTGCCGGCGATGTAGGAGCCGGTGGCACGGATGCGGTGGATGTTCAG 139813 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||| |||||||||||| ||||||||| | ||||| |||||||||||||||||||| Sbjct 139812 GCCAATGCCGCCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGCGTGTCGTAGATGCC 139753 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 |||||| ||| |||||||||| || || ||||| |||||| || | || | || Sbjct 139752 CTCGATGCTGTCATCCTTCATGTCGACCAGGAAGCAGGACGAGAGCTGGGCCTGGGGTGT 139693 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 |||||||||||||| || |||| || ||||| |||| | ||||||| || ||| Sbjct 139692 ACCGGCGTTGAAGAGGGTCGGCGAAGCGTGTGTGAAGAACTTGCTCGACATGAGGTTGTA 139633 Query 1630362 GGTGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGC 1630421 || | | || ||| || |||| | | || || ||||| ||| Sbjct 139632 TGTCTCAATGACTCGC------------TCGACGTTGTC---TCCCCAGATGCCGACGGC 139588 Query 1630422 GACGCGCATGAGCATGTACTGGGGCCGCTCGACGA 1630456 |||||||||| ||||| ||| || |||||||||| Sbjct 139587 AACGCGCATGATCATGTGCTGTGGACGCTCGACGA 139553 >seq291 Length=46110 Score = 104 bits (114), Expect = 3e-16 Identities = 118/157 (75%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 || ||||| ||||| || || || ||||| ||||| | || ||| | |||||| Sbjct 34541 GATAGCATTGGCGGAACCGTTACCTGCGTCATCCGCAATGCTCCTAGCGGCTTGGGCGAG 34482 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||| |||||| |||||||| | | || |||||||||||| ||||||||||| Sbjct 34481 CCTTGCTTCGACAAGCTCGAGGCCATGTTGGCACACGCCATGCTGAGCATCCCGGCCACA 34422 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTTT-GCGGGTGCG 19202 ||||| |||||||| || ||| ||| |||| |||| Sbjct 34421 AAGGGCTTCGAGATCGGTTCCGGCTTTGGCGGCTGCG 34385 Score = 86.0 bits (94), Expect = 8e-11 Identities = 162/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 18096 CTTTGGCGAGTCGCACGGGGCGGGC-GTCGGCTGCATCATCGACGGCGTGCCGCCGTGCA 18154 || ||||||||| ||| | || | |||||||||||| |||||||| |||||| ||| Sbjct 35226 CTATGGCGAGTCCCACTGC-CGCTCTGTCGGCTGCATCGTCGACGGCTGCCCGCCGGGCA 35168 Query 18155 TGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCG 18214 || || | |||| ||||||||||| ||| || || || || ||||||||| || Sbjct 35167 TGGAGCTCACAGAGGAGGACATCCAGCCCCAGATGACGCGCCGGCGCCCGGGCCAGAGCA 35108 Query 18215 CACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACG 18274 | | || || || |||||| || | || | |||||||| || || ||| | Sbjct 35107 ACATCACGACTCCCCGGAACGAGAAGGACAGGGTGCTGATCCAGTCTGGAACCGAGTTTG 35048 Query 18275 GCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCC 18330 || | || ||||| |||| | ||| | | ||| || |||||||||||| Sbjct 35047 GCGTAACTCTCGGGACGCCAATTGGCATGATGGTGTTGAATGAAGACCAGCGGCCC 34992 >seq283 Length=47698 Score = 102 bits (112), Expect = 1e-15 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| |||||||||||| | || || || | || |||||| | || ||||| Sbjct 8824 GCTGCAAACTATCTCGACATCAAGGCACTTCTGGACGTCGGCTGCAAGACAGTTGCCAAT 8765 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| || ||||||||||| || || || ||||||| Sbjct 8764 ATGATCAAGGGCAAGTCTCCGGAGGAGATCCGGAAAACTTTCAACATCA 8716 >seq110 Length=94451 Score = 87.8 bits (96), Expect = 2e-11 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 344181 GGTGGCCTTCCCCACCGAGACCGTCTACGGCCTCGGCGCCGACGCCACGTCTGACGAGGC 344240 ||| || ||||| || ||||||||||||||||||||||| |||||||| ||| || Sbjct 36826 GGTCGCTTTCCCAACAGAGACCGTCTACGGCCTCGGCGCTGACGCCACCCGCTCCGACGC 36767 Query 344241 CGTGCGGCGCATCTTTGAGGTCAAGGGCCGACCCTCCAACAACCCGATCATTGTGCAC 344298 ||| ||| | |||| | ||||||||| || ||| ||||||| | || |||||| Sbjct 36766 CGTCCGGGGAATCTACACAGCCAAGGGCCGCCCATCCGACAACCCCTTAATCGTGCAC 36709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107073219994868