Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Madurella_20mycetomatis_20[genbank_20GCA_5F001275765.2_202016-03-09] 804 sequences; 36,704,944 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq30 159 1e-33 seq32 129 2e-24 seq177 100 9e-16 seq67 95.1 4e-14 >seq30 Length=149590 Score = 159 bits (176), Expect = 1e-33 Identities = 443/673 (66%), Gaps = 10/673 (1%) Strand=Plus/Plus Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 |||| ||||| || || ||||| || |||||| | || ||||| || | |||||| || | Sbjct 90949 GTGT-GAAATCATCGCCAATGACCAGGGTAACCGGACGACGCCCTCGTTCGTTGCCTTCA 91007 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 |||| || |||||| | || || ||| | || || || |||| || || |||| | Sbjct 91008 CCGACACAGAGCGTCTCATCGGAGATGCCGCCAAGAACCAAGTCGCCATGAACCCAACGA 91067 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGA--CAAATCTACAC 349433 |||| || |||||||| ||||| || ||||| | ||||| | || | | | || Sbjct 91068 ATACCGTCTTTGATGCCAAGCGCCTCATTGGCCGCAAGTTCAAC-GATGCTGAGGTTCAG 91126 Query 349434 AATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTA 349493 | ||| | || || || ||||| | | || | || || || || | | Sbjct 91127 G--CCGATATGAAGCACTTCCCTTTCAAGATCATTG---ACCGCGCTGGCAAGCCTGTCA 91181 Query 349494 TTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGG 349553 | ||||| || | || || || | || || ||||| || || || || |||| Sbjct 91182 TGGAGGTCGAGTTCAAGGGCGAGAAGAAGGTCTTCACCCCCGAGGAGATCTCGTCCATGG 91241 Query 349554 TTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTG 349613 | | || ||| || | ||| || | || | |||| || || | | || | Sbjct 91242 TCCTGACCAAGATGCGTGAGACTGCCGAGTCCTACCTTGGTGGCACCGTCAGCAACGCCG 91301 Query 349614 TTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCA 349673 | || ||||| || ||||| || || || | |||||| || || || ||||| || Sbjct 91302 TCATCACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGATGCCGGTC 91361 Query 349674 GCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCAT 349733 ||||||||| | || || || | || || || || || ||||| || || ||||| | Sbjct 91362 TCATTGCGGGCCTGAACGTCCTCCGTATCATCAACGAGCCTACTGCCGCTGCCATTGCCT 91421 Query 349734 ATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTG 349793 | || || || || | || ||| || || |||| || || ||| | ||||| | Sbjct 91422 ACGGTCTCGACAAGAAGATTGAGGGTGAGCGCAACGTTCTCATCTTCGATCTTGGTGGCG 91481 Query 349794 GTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTG 349853 ||||||| ||||| || || || || | || ||||| || || || || || | |||| Sbjct 91482 GTACTTTCGATGTGTCCCTCCTGACCATCGAGGAGGGCATCTTCGAGGTCAAGTCGACTG 91541 Query 349854 CTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTA 349913 |||||||||| || | ||||| || || || || || |||||||| || || |||| Sbjct 91542 CTGGTGATACCCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTCAACCACTTCGTTA 91601 Query 349914 AAGAATTTAAGCG 349926 | ||||| || || Sbjct 91602 ACGAATTCAAACG 91614 >seq32 Length=147543 Score = 129 bits (142), Expect = 2e-24 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | | || || ||||| || || ||||| || || ||||| | Sbjct 71012 TTTGCATGCCACCACGGAGACGAAGGACGAGATGGAGCGTCGACTCCTTCTGGATATTGT 70953 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || | || || ||||| || || || || || || || || || || ||||| | Sbjct 70952 AATCCGAGAGGGTACGACCATCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGT 70893 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| ||||| || || ||||||||||| || | || |||||||| || | ||| || | Sbjct 70892 CAGGCGGAATACCCTCCTTATCCTGAATCTTCGACTTGACATTATCGATGGTATCGGACG 70833 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||| || || || || | ||||||||||| Sbjct 70832 ATTCCACCTCGAGGGTGATGGTCTTTCCGGT 70802 Score = 116 bits (128), Expect = 1e-20 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 ||| || || ||||| || ||||| | || || ||||| || | || || || || || Sbjct 71425 CTCCTTCTGGATATTGTAGTCAGACAGAGTCCGACCATCCTCCAACTGCTTGCCCGCGAA 71366 Query 140606 GATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665 ||| ||||| ||||||||||| || || || || || |||||||| || | || || || Sbjct 71365 GATGAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTT 71306 Query 140666 ATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||||| | || || | ||| || || || |||| |||||||| || || || || || Sbjct 71305 GTCAATTGTGTCCGAAGATTCCACCTCGAGCGTAATCGTCTTTCCTGTGAGCGTCTTGAC 71246 Query 140726 AAAAATCTGCAT 140737 ||||||||||| Sbjct 71245 GAAAATCTGCAT 71234 Score = 93.3 bits (102), Expect = 1e-13 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || ||||| ||| || || || || || || Sbjct 71236 CATACCACCACGCAGACGGAGAACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTC 71177 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || | || || || || ||||| ||||| || |||||||| Sbjct 71176 GGACAGGGTCCGACCGTCCTCCAACTGCTTGCCCGCGAAGATGAGACGCTGTTGATCAGG 71117 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | ||| || || ||||| | || || | || Sbjct 71116 CGGGATGCCCTCCTTGTCCTGGATCTTTGATTTGACGTTGTCAATGGTGTCCGAGGACTC 71057 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | || | ||||| || || || || || || ||||| ||||| Sbjct 71056 CACCTCCAACGTGATCGTCTTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 71006 >seq177 Length=70791 Score = 100 bits (110), Expect = 9e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || ||||| || || || ||| || || || ||||| || || Sbjct 29388 ACCACCACGCAGGCGGAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTATAGTCGGA 29447 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || || ||||||||||| || ||||| || || || Sbjct 29448 GAGAGTCCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATTAGGCGCTGCTGGTCGGGCGG 29507 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || ||||| || |||| || ||||| || || | || | || || Sbjct 29508 GATGCCCTCCTTGTCCTGGATCTTAGACTTGACATTGTCGATGGTGTCGCTCGACTCCAC 29567 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || || |||||||| Sbjct 29568 CTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 29615 >seq67 Length=117402 Score = 95.1 bits (104), Expect = 4e-14 Identities = 110/148 (74%), Gaps = 3/148 (2%) Strand=Plus/Plus Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505 ||||| | | ||| || |||||| |||| || || |||||| | ||||| |||||| Sbjct 56352 ATTTCCTTGAGGCGGGGGACACCAAGTGTGACGTT---TTTAGACGACACACCGGCAAAG 56408 Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565 ||||| || || || || | ||||| | |||||||| || ||||| || || | || Sbjct 56409 TGGAATGTGTTCAGCGTCATCTGAGTGGCCGGCTCACCGATGGACTGGGCGGCGAGCACT 56468 Query 377566 CCAACCATTTCTCCAGGATTGACAATAG 377593 ||||||||||||||||| ||| |||| Sbjct 56469 CCAACCATTTCTCCAGGCGAGACCATAG 56496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515238790985612