Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Madurella_20mycetomatis_20[genbank_20GCA_5F001275765.2_202016-03-09] 804 sequences; 36,704,944 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq32 161 2e-34 seq177 154 3e-32 seq20 140 8e-28 seq12 96.9 8e-15 >seq32 Length=147543 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| |||||| ||| || |||||||| || || | ||||||| || || Sbjct 71217 AGAACCAAGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGACCGTCC 71158 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| |||||||| || || ||||| ||||| || | || ||||||||| Sbjct 71157 TCCAACTGCTTGCCCGCGAAGATGAGACGCTGTTGATCAGGCGGGATGCCCTCCTTGTCC 71098 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| ||| ||||| || |||||||| ||| || ||||| | ||||||||| Sbjct 71097 TGGATCTTTGATTTGACGTTGTCAATGGTGTCCGAGGACTCCACCTCCAACGTGATCGTC 71038 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | ||||| Sbjct 71037 TTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 71006 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || || ||||| || ||||| || ||||||| ||||| | ||||| Sbjct 70989 AGGACGAGATGGAGCGTCGACTCCTTCTGGATATTGTAATCCGAGAGGGTACGACCATCC 70930 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || ||||| || |||||||| |||| || ||||| ||| Sbjct 70929 TCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCAGGCGGAATACCCTCCTTATCC 70870 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || |||||||| || || ||| |||||||| ||||| ||| Sbjct 70869 TGAATCTTCGACTTGACATTATCGATGGTATCGGACGATTCCACCTCGAGGGTGATGGTC 70810 Query 211083 TTTCCCGT 211090 ||||| || Sbjct 70809 TTTCCGGT 70802 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||| ||| || ||||| || || || | || |||| ||||| Sbjct 71445 AGCACCAAGTGCAGTGTGCTCTCCTTCTGGATATTGTAGTCAGACAGAGTCCGACCATCC 71386 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| |||||||| || || || || ||||| || | || ||||||||| Sbjct 71385 TCCAACTGCTTGCCCGCGAAGATGAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCC 71326 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| || || ||||| || ||| |||||||| || |||||| Sbjct 71325 TGAATCTTGGACTTGACGTTGTCAATTGTGTCCGAAGATTCCACCTCGAGCGTAATCGTC 71266 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| || || | |||||| Sbjct 71265 TTTCCTGTGAGCGTCTTGACGAAAATCTGCAT 71234 >seq177 Length=70791 Score = 154 bits (170), Expect = 3e-32 Identities = 164/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||| ||| || ||||||||||| || | || |||| ||||| Sbjct 29404 AGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTATAGTCGGAGAGAGTCCGGCCATCC 29463 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 29464 TCGAGCTGCTTGCCGGCAAAGATTAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 29523 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| || || || ||||||||||| ||| || ||||| || ||||| Sbjct 29524 TGGATCTTAGACTTGACATTGTCGATGGTGTC---GCTCGACTCCACCTCAAGGGTGATA 29580 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| ||||| || || | |||||| Sbjct 29581 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 29615 >seq20 Length=161045 Score = 140 bits (154), Expect = 8e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||| ||||| || || | ||||| | || || || ||||||||||| || ||||| Sbjct 65469 TTTTGAATGTTGTAGTCAGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATC 65528 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || ||||| || || | || ||||||||||||||||| || || || ||| Sbjct 65529 AGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 65588 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||||| || ||| || |||||||| ||||| ||||| |||||||| ||||| || || Sbjct 65589 ATGGTATCCGAGGACTCGACCTCGAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAG 65648 Query 211107 ACCTGCA 211113 | ||||| Sbjct 65649 ATCTGCA 65655 >seq12 Length=176190 Score = 96.9 bits (106), Expect = 8e-15 Identities = 184/266 (69%), Gaps = 10/266 (4%) Strand=Plus/Minus Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149 |||||| ||||||||||| | ||||| || ||| ||||| |||||||| | || Sbjct 140322 GTTCTTCTGGTTGCTCTTCCGGTTGCAA-TG--ATCCTTGTAGAGCATGAAGGGGTTGCC 140266 Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTT-- 178207 ||| | |||||| |||| ||| || ||| |||| |||||| ||| ||||| Sbjct 140265 AGTCTCGGTCTGAGCCTCGAGGATGGCATACCATAGCTTCTGGGCCTTGACCGTCTTGCG 140206 Query 178208 TTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACA 178267 | || | | || ||||||||||| | ||| || |||| || || || ||| Sbjct 140205 TCCGCGGTCC--TCCTTCTCGTACTTCTCGTATAGAGCCTCAAACTCTTCGCCGTAGCAG 140148 Query 178268 TCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACT 178327 || |||||||||| |||||||||||| | ||| |||||| |||| | || || Sbjct 140147 TCGGCGAGACCGGGGCACTCATTGGGGCACATGAGCGTCCACTCCCCGTTCTTCTCAACG 140088 Query 178328 CGTTTCATGAAGAGGTCAGAGGTCCA 178353 || |||||||| || || | | |||| Sbjct 140087 CGCTTCATGAAAAGATCCGGGATCCA 140062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159140059285460