Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Madurella_20mycetomatis_20[genbank_20GCA_5F001275765.2_202016-03-09] 804 sequences; 36,704,944 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq177 149 2e-30 seq32 145 2e-29 seq20 131 4e-25 >seq177 Length=70791 Score = 149 bits (164), Expect = 2e-30 Identities = 159/209 (76%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || |||||||| || ||||| || || || |||||||| |||||||| ||| Sbjct 29612 CAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC--- 29556 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||| || ||||| ||||| |||||||| || || ||||| || |||||| Sbjct 29555 GACACCATCGACAATGTCAAGTCTAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 29496 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||| ||||| || |||||||| ||||| ||||||| |||| |||||| Sbjct 29495 CAGCGCCTAATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGGACTCTCTCCGACTATAAC 29436 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || ||||| Sbjct 29435 ATCCAGAAGGAGAGCACCCTCCACCTTGT 29407 >seq32 Length=147543 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||||||||| ||||| || |||||||||||| || ||| Sbjct 71237 CAGATTTTCGTCAAGACGCTCACAGGAAAGACGATTACGCTCGAGGTGGAATCTTCGGAC 71296 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||||||||||| || || ||||| || || ||||| Sbjct 71297 ACAATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCGCCTGATCAGCAG 71356 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||| | || ||||| ||||||| | || || || || Sbjct 71357 CGTCTCATCTTCGCGGGCAAGCAGTTGGAGGATGGTCGGACTCTGTCTGACTACAATATC 71416 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || |||||||| |||| Sbjct 71417 CAGAAGGAGAGCACACTGCA-CTTG 71440 Score = 138 bits (152), Expect = 3e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || || |||||||| | |||||||| ||| ||| Sbjct 71009 CAAATTTTCGTCAAGACTCTGACTGGCAAGACGATCACGTTGGAGGTGGAGTCCTCGGAC 71068 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||||||| |||||| |||||||| || || ||||| || || || || Sbjct 71069 ACCATTGACAACGTCAAATCAAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAACAG 71128 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||| | || || || |||| || |||| || ||| || Sbjct 71129 CGTCTCATCTTCGCGGGCAAGCAGTTGGAGGACGGTCGGACCCTGTCCGACTACAACATC 71188 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || ||||| |||| || Sbjct 71189 CAGAAGGAGAGCACTCTGCA-CTTGGTT 71215 Score = 127 bits (140), Expect = 5e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || ||||| || |||||||||||||||||| || || |||||||| || ||||| Sbjct 70802 ACCGGAAAGACCATCACCCTCGAGGTGGAATCGTCCGATACCATCGATAATGTCAAGTCG 70861 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||||||||| || || || || || || |||||||| || || || ||||| || || Sbjct 70862 AAGATTCAGGATAAGGAGGGTATTCCGCCTGACCAGCAGCGCCTGATTTTCGCGGGCAAG 70921 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| ||||| | || || | ||||| || |||| || || || || || ||| Sbjct 70922 CAGCTCGAGGATGGTCGTACCCTCTCGGATTACAATATCCAGAAGGAGTCGACGCTCCAT 70981 Query 178125 CTTGT 178129 || || Sbjct 70982 CTCGT 70986 >seq20 Length=161045 Score = 131 bits (144), Expect = 4e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || || |||||||||||||| || ||| || Sbjct 65653 CAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTCGAGGTCGAGTCCTCGGAT 65594 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 65593 ACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAG 65534 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| || || | || || | || || ||| | Sbjct 65533 CGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCTGACTACAACATT 65474 Query 178104 CAAAA 178108 ||||| Sbjct 65473 CAAAA 65469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203718800063976