Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20grisea_20[genbank_20GCA_5F001548795.1_202016-02-04] 2,196 sequences; 42,458,485 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1560 203 4e-47 >seq1560 Length=61984 Score = 203 bits (224), Expect = 4e-47 Identities = 577/874 (66%), Gaps = 26/874 (3%) Strand=Plus/Plus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || || | || ||||||| | ||| || |||| | || || || ||||| || Sbjct 7871 AGGGCACTCGTTAGGGCACATCAGAGTCCAGTCGCCGTTCTTCTCAACACGCTTCATGAA 7930 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 |||||||| ||||||||||| | || ||||| | | | | ||||| ||||| Sbjct 7931 CAGATCAGGGATCCAAAGAGCGAGGAACAGATCGCGGGCACGAATCTCCTCCTTTCCGTG 7990 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||||| | || ||||||||| | | | ||| | |||||||| || | ||| ||||| Sbjct 7991 GTTCTTCCTCAGGTCGAGGAACTCGAAGACATCTGCGTGCCACGGCTCAAGGTAGATGGC 8050 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | || || || ||||| || ||||| || | ||| | ||| ||||| || | || Sbjct 8051 AAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAACGAGCCGTGTTGTTGAAGAC 8110 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | || ||| |||| ||| || || || | || |||||||||| ||||||| ||| | Sbjct 8111 ACGCAGCATAGGAACAATGCCATTCGAGGTGCCGTTGGTACCGGCGATATAGGAACCAGT 8170 Query 63521 GGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 |||||| ||| | | ||| ||||| || || || ||||| || ||||| | || Sbjct 8171 GGCACGGATACGATGGACGTTG--AGACCGATACCGCCAGCCATCTTGGAGATCATGGCA 8228 Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638 || || | || ||||||||||| || || || ||||| |||||| || || || Sbjct 8229 CAGGTCTTGAGGGTATCATAGATGCCCTCGATACTGTCATCCTTCATGTCAACCAGGAAG 8288 Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698 || |||| ||| | | || || || || || | || || || ||||| || Sbjct 8289 CATGATGACAATTGAGCCTGCGGTGTGCCGGCGTTGAAGAGCGTCGGGGACGCGTGTGTG 8348 Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGAGTCTATATC-CCATT 63753 || |||| || | || ||||| ||||| || ||| | | | | || || Sbjct 8349 AAGAATTTGCTGGACATAAGGTTGTAGGTCTCGATGACACGCTCAATGT-TGTCACCCCA 8407 Query 63754 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGT 63813 | || ||||| || |||||||| | ||||||||| || || |||||||| ||| || Sbjct 8408 G----ATACCTACAGCAACACGCATGATCATGTGCTGTGGCCTCTCAACAATCTTGCCGT 8463 Query 63814 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63873 | | || | | ||| || | || | || || || |||||||| | ||| |||| Sbjct 8464 TGAGCTTGAGAAGGTAAGACCTCTCGAGGGTCTTGAAGCCAAAATATTGGTAGTTGAAGT 8523 Query 63874 CTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTAT-ATCCA-T 63931 | || || || | |||| | || | ||| |||| | |||| | || | || | Sbjct 8524 CACGATCATAGACAATAGCTGAGTCGAG---ATCC---TCCTTGTGACGCATGACGCAGT 8577 Query 63932 GGTA-ATA-CTTGA--AATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGA 63987 ||| || ||||| ||| || ||||| | || || || || || || ||||||| || Sbjct 8578 CGTATGTATCTTGAGCAATCATGGGAGAGAGCTTGCCGTTCTTGGGGTTTACATAGTGGA 8637 Query 63988 ATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGG 64047 | | || |||||| ||| | || || || | |||||| || ||||| | | Sbjct 8638 AGAGGTCGCTGATCACTGATGAAAACTGCTTCTTGGTCTGCTTGTGAAGGTTTGAGACTG 8697 Query 64048 CTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081 | || | || || || ||||| || || ||||| Sbjct 8698 CGATACGCGCAGCGAGGATGGCGTAGTCGGGATG 8731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629800311506880