Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20grisea_20[genbank_20GCA_5F001548795.1_202016-02-04] 2,196 sequences; 42,458,485 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1560 223 5e-53 >seq1560 Length=61984 Score = 223 bits (246), Expect = 5e-53 Identities = 578/872 (66%), Gaps = 18/872 (2%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| || || || || ||||||| | ||| || || | | | || || ||||| Sbjct 7869 CCAGGGCACTCGTTAGGGCACATCAGAGTCCAGTCGCCGTTCTTCTCAACACGCTTCATG 7928 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 || |||||||| ||||||||||| | || ||||| | || | | |||||| ||||| Sbjct 7929 AACAGATCAGGGATCCAAAGAGCGAGGAACAGATCGCGGGCACGAATCTCCTCCTTTCCG 7988 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| | || ||||||||| | | | ||| | |||||||| || | ||| ||| Sbjct 7989 TGGTTCTTCCTCAGGTCGAGGAACTCGAAGACATCTGCGTGCCACGGCTCAAGGTAGATG 8048 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || || ||||| || ||||| || | ||| | ||| ||||| || | Sbjct 8049 GCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAACGAGCCGTGTTGTTGAAG 8108 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | || ||| |||| ||| ||||| || | || ||||| |||| ||||||| ||| Sbjct 8109 ACACGCAGCATAGGAACAATGCCATTCGAGGTGCCGTTGGTACCGGCGATATAGGAACCA 8168 Query 72274 CTGGCACGAATA--TTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 ||||||| ||| || ||| ||||| || || || ||||| || ||||| | | Sbjct 8169 GTGGCACGGATACGATGGACGTTG--AGACCGATACCGCCAGCCATCTTGGAGATCATGG 8226 Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 | || || | ||||||||||||||||| ||||| |||||| |||||| || || | Sbjct 8227 CACAGGTCTTGAGGGTATCATAGATGCCCTCGATACTGTCATCCTTCATGTCAACCAGGA 8286 Query 72392 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 72451 | || |||| ||| | || || || || || | || || || ||||| | Sbjct 8287 AGCATGATGACAATTGAGCCTGCGGTGTGCCGGCGTTGAAGAGCGTCGGGGACGCGTGTG 8346 Query 72452 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT----AGCTGATTCTATATC-CCA 72506 | || |||| |||| || ||||| ||||| || ||| | | | | || || Sbjct 8347 TGAAGAATTTGCTGGACATAAGGTTGTAGGTCTCGATGACACGCTCAATGT-TGTCACCC 8405 Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566 | || ||||| || |||||||| | ||| ||||| || || ||||| |||||| Sbjct 8406 CAG----ATACCTACAGCAACACGCATGATCATGTGCTGTGGCCTCTCAACAATCTTGCC 8461 Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 72626 || | || | | ||| || | || | || || || |||||||| | ||| || Sbjct 8462 GTTGAGCTTGAGAAGGTAAGACCTCTCGAGGGTCTTGAAGCCAAAATATTGGTAGTTGAA 8521 Query 72627 GTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCAT 72686 ||| || || || | |||| | || | ||| | ||||| | | || || Sbjct 8522 GTCACGATCATAGACAATAGCTGAGTCGAGATCCTCCTTGTGACGCATGACGCAGTCGTA 8581 Query 72687 GGTGATACTTGA--AATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAAT 72744 || || ||||| ||| || ||||| | || || || || || || ||||||| ||| Sbjct 8582 TGT-AT-CTTGAGCAATCATGGGAGAGAGCTTGCCGTTCTTGGGGTTTACATAGTGGAAG 8639 Query 72745 AAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCT 72804 | || |||||| ||| | || || || | |||||| || ||||| || || Sbjct 8640 AGGTCGCTGATCACTGATGAAAACTGCTTCTTGGTCTGCTTGTGAAGGTTTGAGACTGCG 8699 Query 72805 ATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 || | || || || ||||| || || ||||| Sbjct 8700 ATACGCGCAGCGAGGATGGCGTAGTCGGGATG 8731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671120777228960