Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20grisea_20[genbank_20GCA_5F001548815.1_202016-02-04] 1,980 sequences; 42,710,978 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq613 140 2e-28 seq1309 111 1e-19 seq1536 96.9 2e-15 seq1909 84.2 1e-11 >seq613 Length=8294 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 6831 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6772 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 6771 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6737 >seq1309 Length=78646 Score = 111 bits (122), Expect = 1e-19 Identities = 199/289 (69%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 6201 TTCTACCGCTACAAAATGCCGCGCATCTGCG--CCAAGGTCGAGGGTAAGGGAAACGGTA 6258 ||||| || ||||| ||| |||| |||| ||||| ||||||||||||| ||||| | Sbjct 67397 TTCTATCGTTACAAGATGGAGCGC--CTGCAGACCAAGATCGAGGGTAAGGGCAACGGAA 67340 Query 6259 TTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCT 6318 | || ||||| | |||||| | | |||||| || | |||| || |||| ||| Sbjct 67339 TCAAGACCGTTGTCGTCAACCTCACGAGCGTCGCTCAGTCTCTCGCTCGTCCTGGAGCCT 67280 Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||| | || || || || | || || || || ||||| | |||||| | ||| Sbjct 67279 ACCTTATCAAGTACTTTGGCTTTGAGCTCGGTGCCCAGACCAACATTGATCCCGCCGACG 67220 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || | ||| | |||||| | || | |||| ||||| ||||||| || ||||| | Sbjct 67219 ACCGTTGGATCATCAACGGAGCTCACGATGCTGCAAAGCTTCAGGACTACCTCGACGGGT 67160 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 | || ||||||||| || || | | ||| | ||||| ||||| || Sbjct 67159 TCATCAACAAGTTTGTTCTTTGCAAGAAGTGCAAGAACCCCGAGACAGA 67111 >seq1536 Length=70269 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || ||||| ||| | || || ||||||||||| || || ||||| || || Sbjct 29029 ACCACCACGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 29088 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | |||| || | || || |||||||| || | ||| || || || | ||| Sbjct 29089 CAGGGTCCTGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGGGG 29148 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTAT--CTCCACTTTCA 38267 || || || |||||| || || ||| ||||| | || |||| ||| || || Sbjct 29149 GATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCGCTCGAC--TCC 29206 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || || | || ||||| || ||||| | ||| || ||||| ||||||||| || Sbjct 29207 ACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGATT 29260 >seq1909 Length=49172 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | || ||| | |||| || || || |||||||||||| ||||| || | Sbjct 40443 TACCTCCACGCAGACGGAGGACCAGGTGCAGCGTAGACTCCTTTTGAATGTTGTAGTCGG 40502 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || || || ||||| || || || | || ||||| || | || Sbjct 40503 ACAACGTGCGCCCATCCTCCAACTGCTTTCCAGCGAAAATCAATCGCTGTTGGTCTGGGG 40562 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCT--CCACTTTC 38266 ||| ||||| ||||| ||| || || || || | || || ||| | || || Sbjct 40563 GGATTCCTTCCTTGTCTTGAATCTTGGATTTAACGTTGTCGATTGTGTCTGACGAC--TC 40620 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || || || || |||||||| || || ||||| ||||||||| Sbjct 40621 TACCTCCAACGTGATGGTCTTGCCCGTCAAAGTCTTGACGAAGATCTGCATG 40672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334939117305380