Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Magnaporthe_20oryzae_20[genbank_20GCA_5F000734085.1_202014-07-28] 8,396 sequences; 35,759,866 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3240 141 1e-28 >seq3240 Length=8193 Score = 141 bits (156), Expect = 1e-28 Identities = 562/875 (64%), Gaps = 16/875 (2%) Strand=Plus/Minus Query 69352 ATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAAC 69411 || || || || || | ||| || ||||| ||| ||| |||||||| || || ||| Sbjct 5928 ATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTACAGCATGAAC 5869 Query 69412 GGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATT 69471 || ||||||| ||| |||||| || | || || | ||||| | || || || Sbjct 5868 GGGTTACCAGTCTCAGTCTGAGCCTCCAGGATGGAATACCAAAGTTTCTGGGCCTTGATC 5809 Query 69472 ACGGTCTTGTAACGCTTCTCT---TTTTCATA-TTGTG-TATATAGCCGTTCGAATTCAT 69526 |||||| || ||| | | ||||| || | || | |||| ||||| || | Sbjct 5808 ---GTCTTGCGACCCTTACCGGCCTGCTCATACTTCTCATACAGAGCC--TCGAACTCTT 5754 Query 69527 CTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCAT 69586 | || | || | | ||||| || || || || |||||||| | ||| | | | Sbjct 5753 CACCGTAGCAGTCCGCGAGGCCAGGGCACTCGTTCGGGCACATCAAGGTCCAGTCGCCGT 5694 Query 69587 CATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGG 69646 | || ||| || ||||| || ||||| || ||||||||||| | || || || | || Sbjct 5693 TTTTCTCAACGCGCTTCATGAACAGATCAGGGATCCAAAGAGCGAGGAACAGGTCACGGG 5634 Query 69647 TTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAAT 69706 | | | || || ||||| || || | || ||||| ||||| | | ||| | | Sbjct 5633 CACGAATCTCCTCCTTTCCGTGGTTCTTCCTTAGGTCGAGGAACTCGAAGACATCTGCGT 5574 Query 69707 GCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGT 69766 |||| || || || || || || | | | || || || || || || ||||| || | || Sbjct 5573 GCCACGGCTCAAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGT 5514 Query 69767 ATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTG 69826 | | || ||||| || | || | |||||| |||| ||| || || || | || || | Sbjct 5513 AGCGAGCTGTGTTGTTGAACACACGCAGCATGGGAACAATGCCGTTCGAGGTGCCGTTGG 5454 Query 69827 TTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTG 69886 | || | ||||| || | || || || | | ||||| || || || | Sbjct 5453 TACCGGCGATATAGGAGCCAGTGGCACGGATGCGATGGACGTTGAGACCGATACCGCCAG 5394 Query 69887 CCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCAT 69946 |||| || ||||| | |||||| || | ||||| || || ||||| ||||| || | Sbjct 5393 CCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATTCCCTCAATGCTGTCGT 5334 Query 69947 CTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATA 70006 | |||| | || || || || |||| ||| || || || || || || | Sbjct 5333 CCTTCATATCAACCAGGAAGCATGACGACAACTGAGCCTGCGGTGTGCCGGCGTTGAAAA 5274 Query 70007 ATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTG 70066 || || || ||||| ||||| |||| ||| | || ||||| ||||| || || Sbjct 5273 GCGTCGGGGAGGCGTGTGTGAAGAATTTGCTAGACATAAGGTTGTAGGTTTCGATGACTC 5214 Query 70067 ATTCTAT-ATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGT 70125 || || | ||| | || |||| || |||||||| | ||| ||||| || | Sbjct 5213 GCTCAATGTTGTCACCCCAG-ATACCTACAGCAACACGCATGATCATGTGCTGTGGCCTC 5155 Query 70126 TCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAA 70185 || || | || ||| | ||||| ||||| || | || ||||| || || || ||| Sbjct 5154 TCGACAATCTTGCCATTGAGCTTCAATAGGTAAGACCTCTCGAGAGTCTTGAAGCCGAAA 5095 Query 70186 TAGTTGTA--TGAAAAGTCTCTTTCGTAAATAATA 70218 || | ||| ||||| || | ||||| | |||| Sbjct 5094 TATTGGTAGTTGAAA--TCACGGTCGTAGACAATA 5062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686836708921440